Bootcamp feedback

[scarioscia]

Day 1: 0/6 Please create a directory for day1-homework and upload script 1 pt - print out first and last days (exercise 1) 1 pt - calculate averages for all patients (exercise 2) 1 pt - print out first 10 averages (exercise 2) 1 pt - printed out max (exercise 3) 1 pt - printed out min (exercise 3) 1 pt - printed out differences between patients (exercise 4)

Day 2: 5/7 Can you upload the two additional plots (with just the female and then the female + male data)? 1pt - Plot female data (-1) 1pt - Add male data (-1) 1pt - Plotted two x female data 1 pt x axis label 1 pt y axis label 1 pt labelled each line using a legend 1 pt plot title

Day 3: 6/6 1pt - Submitted mean.py + code looks more or less ok 1pt - Submitted mean_from_file.py + code looks more or less ok 1pt - mean_inflammation.py contains function that calculates mean inflammation 1pt - mean_inflammation.py prints output (or at least function returns the man value) 1pt - difference_inflammation.py contains function that calculates the difference in inflammation 1pt difference_inflammation.py prints output (or at least function returns the man value)

Day 4: 9/10 Please upload the plot of single allele trajectory from exercise 1 1 pt - Wright-Fisher function (ex 1) 1 pt - number of generations (ex 1) 1 pt - plot of allele trajectory (ex 1) (-1) 1 pt - plot of multiple allele trajectories (ex 2) 1 pt - histogram of time to fixation (ex 2) 1 pt - plot of population size vs time to fixation (ex 3) 1 pt - plot of allele frequency vs time to fixation (ex 3) 3 pts - short written answers to 3 questions (comment on any 3 plots) In the future, please upload written answers in a .txt file (e.g., made in sublime) or as comments within one of your .py files. GitHub doesn't like word documents For figures, they were somewhat compressed on the x axis making it difficult to view the trends. You have the information all there, but practice in the future making the images as informative as possible - scaling correctly on both axes, etc.

[scarioscia]

Day 1: 6/6 nice work

[jadecathy]

@scarioscia Hi Sara everything updated for revision! One question is that I already updated the .gitignore, but for some reason the .csv files are still visible. Thank you !

[scarioscia]

@jadecathy great work! Day 2: 7/7 Day 4: 10/10

The only .csv file I see is in day1 homework. If you revised the git ignore it will prevent future .csvs from being added but won't remove any that are already there. If you want to get rid of it, you can do (from the day1-homework directory) git rm filename git commit -m "removing csv from github" git status (to check that that's the only change git push This will probably also remove the file from your local directory so if you want to keep it there you can first do cp filename new_filename (change the name to something that is not on github so it remains locally).

[jadecathy]

Thank you so much!