Week 5 Feedback

[schidambaran]

Please only include the files we asked for when submitting your assignment.

Bash script that performs read alignment and variant calling/filtering/annotation

3/3

Exercise	Points Possible	Grade
Read alignment	1	1
Variant calling	1	1
Filtering and annotation	1	1

VCF file containing the first 100 lines of your filtered/annotated VCF from Step 2.4

1/1

Python script that runs exploratory analysis of VCF from Step 2.4

3/4

Exercise	Points Possible	Grade
Code to parse VCF file	2	1.5
Code to produce multi-panel plot	2	1.5

Nicely formatted and labeled multi-panel plot showing summaries of exploratory analysis

1.5/2

Total: 8.5/10

Nice work! For full credit: submit the rest of the assignment and:

* Step 2.2: Site quality scores are reported on the Phred scale, so you need to use those values for vcffilter.

• Step 3.4: Create a barplot showing the predicted effect(s) of the variants in the VCF
• Exercise 3: Please submit one multi-panel plot.

[jadecathy]

Thank you for the feedback! I resubmitted the assignment and i would appreciate it if you can take a look at it. Thank you in advance!

[schidambaran]

Your grade has been updated!