Open creisle opened 1 year ago
Source XML
<table frame="hsides" rules="groups">
<colgroup span="1">
<col span="1"/>
<col span="1"/>
<col span="1"/>
<col span="1"/>
<col span="1"/>
</colgroup>
<thead>
<tr>
<th rowspan="1" colspan="1">
<bold>BRAF<sup>V600</sup> (Sanger)</bold>
</th>
<th rowspan="1" colspan="1">
<bold>Melanoma (n=45)</bold>
</th>
<th rowspan="1" colspan="1">
<bold>Associated nevus (n=46)</bold>
</th>
<th rowspan="1" colspan="1">
<bold>Control nevus (n=25)</bold>
</th>
<th rowspan="1" colspan="1">
<bold>Matched melanoma (n=28)</bold>
</th>
</tr>
</thead>
<tbody>
<tr>
<td rowspan="1" colspan="1">V600E</td>
<td rowspan="1" colspan="1">51.1% (n=23)</td>
<td rowspan="1" colspan="1">63.0% (n=29)</td>
<td rowspan="1" colspan="1">52.0% (n=13)</td>
<td rowspan="1" colspan="1">39.3% (n=11)</td>
</tr>
<tr>
<td rowspan="1" colspan="1">V600K</td>
<td rowspan="1" colspan="1">0</td>
<td rowspan="1" colspan="1">0</td>
<td rowspan="1" colspan="1">4.0% (n=1)</td>
<td rowspan="1" colspan="1">0</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Wildtype</td>
<td rowspan="1" colspan="1">48.9% (n=22)</td>
<td rowspan="1" colspan="1">37.0% (n=17)</td>
<td rowspan="1" colspan="1">44.0% (n=11)</td>
<td rowspan="1" colspan="1">60.7% (n=17)</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<bold>BRAF<sup>V600E</sup> (Sanger + VE1 IHC)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Melanoma (n=46)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Associated nevus (n=46)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Control nevus (n=25)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Matched melanoma (n=29)</bold>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">V600E</td>
<td rowspan="1" colspan="1">63.0% (n=29)</td>
<td rowspan="1" colspan="1">65.2% (n=30)</td>
<td rowspan="1" colspan="1">54.2% (n=13)</td>
<td rowspan="1" colspan="1">41.4% (n=12)</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Wildtype</td>
<td rowspan="1" colspan="1">37.0% (n=17)</td>
<td rowspan="1" colspan="1">34.8% (n=16)</td>
<td rowspan="1" colspan="1">48.0% (n=12)</td>
<td rowspan="1" colspan="1">58.6% (n=17)</td>
</tr>
<tr>
<td rowspan="1" colspan="1">
<bold>NRAS Exon 2 (Sanger)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Melanoma (n=42)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Associated nevus (n=44)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Control nevus (n=21)</bold>
</td>
<td rowspan="1" colspan="1">
<bold>Matched melanoma (n=26)</bold>
</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Silent mutations</td>
<td rowspan="1" colspan="1">2.4% (n=1; A66A)</td>
<td rowspan="1" colspan="1">2.3% (n=1; L52L)</td>
<td rowspan="1" colspan="1">0</td>
<td rowspan="1" colspan="1">0</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Q61K</td>
<td rowspan="1" colspan="1">4.8% (n=2)</td>
<td rowspan="1" colspan="1">4.5% (n=2)</td>
<td rowspan="1" colspan="1">14.3% (n=3)</td>
<td rowspan="1" colspan="1">0</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Q61L</td>
<td rowspan="1" colspan="1">2.4% (n=1)</td>
<td rowspan="1" colspan="1">2.3% (n=1)</td>
<td rowspan="1" colspan="1">0</td>
<td rowspan="1" colspan="1">0</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Q61R</td>
<td rowspan="1" colspan="1">2.4% (n=1)</td>
<td rowspan="1" colspan="1">9.1% (n=4)</td>
<td rowspan="1" colspan="1">0</td>
<td rowspan="1" colspan="1">7.7% (n=2)</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Wildtype</td>
<td rowspan="1" colspan="1">88.1% (n=37)</td>
<td rowspan="1" colspan="1">81.8% (n=36)</td>
<td rowspan="1" colspan="1">85.7% (n=18)</td>
<td rowspan="1" colspan="1">92.3% (n=24)</td>
</tr>
</tbody>
</table>
Seems like the table is just a weird format, even in the original non-PMC article. I will leave this for now but I am documenting it here in case we run into another case, then we may want to come up with a possible solution
Examples from here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704624/
This should really be 3 separate tables so I'm not sure how we can parse this properly. Right now it assumes anything in the tbody isn't a header