what if fails to link

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jd:stella/whatif/ svn info .
Path: .
URL: https://svn.cmbi.ru.nl/whatif/trunk
Repository Root: https://svn.cmbi.ru.nl/whatif
Repository UUID: c3db0d00-7e1a-0410-a20e-a118fe76642f
Revision: 6685
Node Kind: directory
Schedule: normal
Last Changed Author: vriend
Last Changed Rev: 6685
Last Changed Date: 2009-04-06 15:27:39 +0200 (Mon, 06 Apr 2009)

make -f Makefile.mac

/opt/local/bin/gfortran-mp-4.2  -DUNIX -DCTEXT -DARROW -DGLX11 -DX11 -DDX4 -DGL 
-
DKOHO  -O0 -I. -o whatif newqua.o 3ssp.o   aamain.o ahead.o  access.o altatm.o 
anaold.o 
tramov.o tragen.o digit.o  proton.o plim.o   pdbcheck.o sect01.o sect02.o 
sect03.o sect04.o 
sect05.o sect06.o blast.o sect07.o sect08.o sect09.o sudoku.o phytre.o secprd.o 
sog.o build.o  
pdbout.o cdbfil.o histog.o import.o chess.o  chesstls.o cell.o   chiang.o chr.o 
   clufam.o colour.o 
contac.o cystein.o debump.o dgloop.o dgmut.o  drug.o   debugs.o secstr.o geom.o 
anisou.o 
ions.o   ourele.o fbond.o  datbas.o enviro.o websrv.o savsou.o mol8.o   mol9.o  
 cms.o    jmol.o   
essdyn.o jurgen.o usedna.o eaa.o    espace.o extra.o  mcxalg.o elemnt.o 
cmstls.o infpck.o inftls.o 
concrd.o electr.o cmsfil.o coot.o   electr2.o grafic.o gratls.o gratwo.o 
graext.o gradb.o  graone.o 
cmspag.o cmsseq.o modopt.o gpcphy.o drawat.o strand.o grasol.o msippl.o grids.o 
 group.o  
hbonds.o hbond2.o hydro.o  hssp.o   cmspas.o ini.o    items.o  junior.o klonk.o 
 label.o  wiftxt.o 
support.o flygif.o map.o    mapp.o   makpln.o surmap.o marcin.o script.o 
masmap.o mdf.o    
wifgen.o genmen.o menus.o  planar.o dgeom.o mol.o    mol1.o   mol2.o   mol3.o   
mol4.o   
mol5.o   mol6.o mol7.o nmr.o    neibrs.o notes.o  neural.o neutls.o other.o  
ostools.o prompt.o 
plotit.o params.o pirpsq.o pstnew.o pstplt.o porno.o oldqua.o pucker.o refine.o 
rjread.o 
readonly.o pka.o  pka2.o pka3.o scan3d.o scan3s.o scan3e.o scnsdb.o select.o 
pkahyd.o mold.o 
stereo.o setvdw.o search.o server.o sugars.o pdblis.o showiets.o shaget.o 
modify.o gromacs.o 
suppos.o supps2.o sym.o    symrep.o symtls.o symrea.o symcon.o loops.o  
spcial.o spcian.o 
spcold.o doself.o getiets.o tools.o  tlsarr.o tlsio.o  tlsbyt.o tlsfil.o 
tlsmvc.o tlsn77.o tlslog.o 
tlsort.o tlssts.o tlssup.o tlstxt.o tlsmio.o tables.o teach.o  wifsup.o 
wifsp2.o wifsp3.o wifsp4.o 
water.o  xray.o   ccp4.o   xbfact.o refmac.o irigra.o irisup.o iriobj.o 
irimov.o iridial.o xragmx.o 
iriini.o iripick.o rolando.o robmenu.o elmar.o jens.o makdb.o  maklog.o 
difout.o walhid.o 
walsad.o walign.o waltls.o walcor.o walgra.o walprf.o walseq.o walvar.o 
walsrt.o walser.o 
masmp2.o whatis.o dummy-2.o   getline/getline.o getline/wifconn.o  version.o 
-lm -
L/usr/X11R6/lib -lX11
Undefined symbols:
  "_ddb100_", referenced from:
      _drg040_ in drug.o
      _drg041_ in drug.o
      _drg044_ in drug.o
      _drg045_ in drug.o
      _drg046_ in drug.o
      _drg055_ in drug.o
      _drg056_ in drug.o
      _drg058_ in drug.o
      _drg061_ in drug.o
      _drg062_ in drug.o
      _drg063_ in drug.o
      _drg064_ in drug.o
      _drg065_ in drug.o
      _drg067_ in drug.o
      _drg068_ in drug.o
      _drg071_ in drug.o
      _drg080_ in drug.o
      _drg081_ in drug.o
  "_ddb050_", referenced from:
      _men056_ in menus.o
  "_ddb101_", referenced from:
      _drg041_ in drug.o
      _drg061_ in drug.o
      _drg062_ in drug.o
      _drg063_ in drug.o
      _drg064_ in drug.o
      _drg065_ in drug.o
      _drg067_ in drug.o
      _drg068_ in drug.o
      _drg071_ in drug.o
      _drg081_ in drug.o
  "_ddb051_", referenced from:
      _men056_ in menus.o
  "_ddb102_", referenced from:
      _drg063_ in drug.o
      _drg080_ in drug.o
      _drg080_ in drug.o
      _drg080_ in drug.o
      _drg080_ in drug.o
      _drg080_ in drug.o
      _drg081_ in drug.o
  "_ddb052_", referenced from:
      _men056_ in menus.o
  "_ddb103_", referenced from:
      _drg071_ in drug.o
  "_ddb060_", referenced from:
      _men056_ in menus.o
  "_ddb061_", referenced from:
      _men056_ in menus.o
  "_getddb_", referenced from:
      _drg080_ in drug.o
      _drg101_ in drug.o
  "_getdbs_", referenced from:
      _drg040_ in drug.o
      _drg041_ in drug.o
      _drg044_ in drug.o
      _drg045_ in drug.o
      _drg046_ in drug.o
      _drg080_ in drug.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
make: *** [whatif] Error 1

Original issue reported on code.google.com by jurge...@gmail.com on 29 May 2009 at 1:12

[GoogleCodeExporter]

Fixed as per new Makefile attached.

Original comment by jurge...@gmail.com on 2 Jun 2009 at 8:59

Attachments:

• Makefile.mac

[GoogleCodeExporter]

Original comment by jurge...@gmail.com on 2 Jun 2009 at 10:10

• Changed state: Fixed