Need RNA template for THY in database (somewhat obscure)

jakesylvestre / cing

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Need RNA template for THY in database (somewhat obscure) #327

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago

A mix of U.sml and DT.sml.
It's important because now any chain with a THY will be considered to be of 
type other i.s.o. RNA.
This might a nice one for you Geerten as the creator of these files in general.
I'm working on a test case in test_molecule.py.

Original issue reported on code.google.com by jurge...@gmail.com on 16 Mar 2012 at 10:17

GoogleCodeExporter commented 9 years ago

Not a big deal for NRG-CING so downgrading priority. This is because the import 
from CCPN works very well;-)

Original comment by jurge...@gmail.com on 16 Mar 2012 at 11:07

Added labels: Entry-1a4d, Entry-2hgh, Priority-Medium
Removed labels: Priority-High

GoogleCodeExporter commented 9 years ago

Original comment by jurge...@gmail.com on 26 Mar 2012 at 11:54

Added labels: Milestone-Paper-CING

GoogleCodeExporter commented 9 years ago

Committed to revision 1155 and fixed tests in r1156.

NB the RTHY in T.xml is not a normally occurring nucleic acid. The RNA 
equivalent of the DNA residue T is U.

Original comment by jurge...@gmail.com on 28 Mar 2012 at 1:42

Changed title: Need RNA template for THY in database (somewhat obscure)
Changed state: Fixed