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jakob-he / TADA

TAD-aware annotation of CNVs
MIT License
7 stars 2 forks source link

Problems running TADA #6

Closed Gedofs closed 1 year ago

Gedofs commented 2 years ago

Hi! I installed tadacnv via pip successfully however I can´t run it.

Screenshot 2022-11-18 at 12 56 10

I hope you can help me.

jakob-he commented 2 years ago

Hi @Gedofs!

This seems to be a dependency issue. I would recommend creating a new conda environment for tadacnv. Then try reinstalling the package via pip. I only tested it using python 3.6. So the following could work:

conda create -n tada python=3.6
conda activate tada
pip install tadacnv

If the problem still persists let me know!

Gedofs commented 1 year ago

Thanks! Still issues. Seems like it is related to python 3.6

Screenshot 2022-11-21 at 9 09 41
jakob-he commented 1 year ago

Apparently, for the more recent osx-arm64 systems python versions < 3.8 are no longer partof the conda forge build matrix. You could try setting the conda environment up with python=3.8 instead. If there are still problems, I might have to update the tool for newer python versions.