Closed wwzhang closed 7 months ago
Dear @wwzhang, thanks for using TrendCatcher! You can find the detailed method in our manuscript Method section. Since each Seurat object's annotation is different, we suggest you to convert it into pseudo-bulk matrix first. Each row is a gene, each column is the pseudo-bulk gene expression count (you can round up as integers). Then change the column name based on the TrendCatcher requirement, then run the analysis.
I can't find any info to do this? Could you share?