Open fmaguire opened 4 years ago
Is this still a desired feature? To save login/API issues the easiest way to implement something close would be just to pre-generate all the tables and collate all the correct files for upload. Would also require the sample table expanding to including the metadata.
"This code generates NCBI biosamples from GISAID sample information. Could form a useful template to work off. https://github.com/schultzm/gnb"
Write accessory scripts to upload clean reads as biosamples and final assembly to nexstrain/GISAID