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jalhackl / introunet

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use `pandas.to_hdf5()` #26

Closed xin-huang closed 6 months ago

xin-huang commented 8 months ago

How about replace

https://github.com/jalhackl/introunet/blob/d7972259749353243ac53da03263d9635d4ce326/intronets_hdf_extended.py#L24-L26

with pandas.to_hdf5()

Then in train.py from gita, we can use pandas to read either feature tables for logistic regression or genotype matrices for U-Net