search

jambler24 / GenGraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
GNU General Public License v3.0
52 stars 16 forks source link

Convert / import vg gfa file #10

Open jambler24 opened 4 years ago

jambler24 commented 4 years ago

Create a function to convert to and from gfa format used by vg. The format is defined here:

https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md

This may be tricky as at first glance vg does not use a coordinate system for keeping track of relative nucleotide positions. Will look into this.