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jamescasbon / PyVCF

A Variant Call Format reader for Python.
http://pyvcf.readthedocs.org/en/latest/index.html
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Fix affected_start/end with a MNP #306

Open nh13 opened 6 years ago

nh13 commented 6 years ago

pyvcf does not like MNPs where the REF and ALT alleles share common bases (ex. REF=AAA and ALT=AAT).