jamesdolezal / slideflow

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
https://slideflow.dev
GNU General Public License v3.0
230 stars 38 forks source link

Project doesn't see slides. Help needed. #363

Open LeventAksakal opened 2 months ago

LeventAksakal commented 2 months ago

This is my datasets.json file

{
 "dataset2": {
    "slides": "D:/Belgeler/SlideFlow/slides",
    "roi": "dataset/slides2.svs/rois",
    "tiles": "D:/Belgeler/SlideFlow/tiles",
    "tfrecords": "D:/Belgeler/SlideFlow/tfrecords"
  }
}

and this is settings.json file

{
 "name": "MyProject",
 "annotations": "D:/Belgeler/SlideFlow/annotation.csv",
 "dataset_config": "./datasets.json",
 "sources": [
  "dataset2"
 ],
 "models_dir": "./models",
 "eval_dir": "./eval",
 "slideflow_version": "2.3.1"
}
spencerkrichevsky commented 1 month ago

I'm coming across the same issue.

I'm able to extract tiles from the TCGA_LUNG dataset, but not when I apply the code to my own dataset.