The "predict_slide" function in slideflow studio does not work. I have been using the magnification value in the tile_um variable during tile extraction. The slides (TCGA library for ER status by IHC) appear to have different tile_um sizes ranging from 497 to 505 uM when they are loaded in slideflow. Is this variable nature the problem?
To Reproduce
Steps to reproduce the behavior:
Load project
Load MIL model
Load slide that has been run in MIL model w/ attention values
Click predict slide
Error message in slideflow studio
MIL model tile size (tile_px = 500, tile_um = 10x) does not match the currently loaded slide (tile_px = 500, tile_um=497)
Expected behavior
I want to be able to predict the slide and overlay attention values.
Description
The "predict_slide" function in slideflow studio does not work. I have been using the magnification value in the tile_um variable during tile extraction. The slides (TCGA library for ER status by IHC) appear to have different tile_um sizes ranging from 497 to 505 uM when they are loaded in slideflow. Is this variable nature the problem?
To Reproduce
Steps to reproduce the behavior:
Error message in slideflow studio MIL model tile size (tile_px = 500, tile_um = 10x) does not match the currently loaded slide (tile_px = 500, tile_um=497)
Expected behavior
I want to be able to predict the slide and overlay attention values.
Environment:
pip, source): pip