In the ARIBA output file for Phandango, it includes “.tsv” in the title of the isolate name and “.match” in the resistance name. Removing those would clean up the visualization and also allow you to use the output csv with your core genome tree without modification.
In the ARIBA output file for Phandango, it includes “.tsv” in the title of the isolate name and “.match” in the resistance name. Removing those would clean up the visualization and also allow you to use the output csv with your core genome tree without modification.