Closed johnlees closed 8 years ago
Like this: http://locuszoom.sph.umich.edu/locuszoom/ http://i1.rgstatic.net/figure/250924167_fig3_GWAS-of-plasma-CFH-and-CFHR1-concentrations-in-the-Croatian-cohort-(n--1004)-including/ddt33603
Input would be rows of variants, with columns with position on genome, p-val (or could be -log_10 p-val, which is what should be plotted) and optionally r^2 value which points are coloured by. If easy, point size could be proportional to effect size
added in commit 323814b
jameshadfield
commented
8 years ago
Like this: http://locuszoom.sph.umich.edu/locuszoom/ http://i1.rgstatic.net/figure/250924167_fig3_GWAS-of-plasma-CFH-and-CFHR1-concentrations-in-the-Croatian-cohort-(n--1004)-including/ddt33603
Input would be rows of variants, with columns with position on genome, p-val (or could be -log_10 p-val, which is what should be plotted) and optionally r^2 value which points are coloured by. If easy, point size could be proportional to effect size