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jamiewaese / ePlant

ePlant is a data visualization tool for integrating and exploring multiple levels of biological data.
MIT License
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Implement JSMOL 3D protein viewer #30

Closed jamiewaese closed 10 years ago

jamiewaese commented 11 years ago

Use the new version by Geoff Fucile.... get link and manuscript from Nick.

yuzhenmi commented 11 years ago

For now, I've embedded the basic JSmol without Geoff's work or any other features. It just loads a hard-coded protein. Like Cytoscape, just click on the icon to see it.

yuzhenmi commented 11 years ago

I noticed that, since the JSmol canvas has a white background, it covers the rounded corners of the ePlant container's border. I hope that is not much of an issue, because the JSmol documentation says that the background color only has red, green and blue values, with no alpha option. If it is indeed an issue, I guess we can make the JSmol canvas smaller so that it does not overlap with the round corners.

jamiewaese commented 11 years ago

We may have to do that, but let's leave it for now. I'm still considering if we need the border.

On 2013-10-15, at 10:21 PM, Hans Yu notifications@github.com wrote:

I noticed that, since the JSmol canvas has a white background, it covers the rounded corners of the ePlant container's border. I hope that is not much of an issue, because the JSmol documentation says that the background color only has red, green and blue values, with no alpha option. If it is indeed an issue, I guess we can make the JSmol canvas smaller so that it does not overlap with the round corners.

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