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janelia-cellmap / cellmap-nuclei

Generating nucleus segmentations for FIB-SEM datasets of cells and tissues
BSD 3-Clause "New" or "Revised" License
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jrc_mus-kidney-2 #24

Open jonesa3 opened 3 months ago

avweigel commented 3 months ago

@davidackerman path of tif that needs relabeling is under 3D Prediction Path - v0 (raw)

Is this something that @jonesa3 could learn to do?

davidackerman commented 3 months ago

yeah for sure she can learn to do it! can you point me to the full path?

jonesa3 commented 3 months ago

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-kidney-2/s4_cp_masks_amira_proofread.tif

yuriyzubov commented 3 months ago

/avetissiane/tiff_slices/jrc_mus-kidney-2/s4_cp_masks_amira_proofread_relabel.zarr

rinva commented 2 months ago

Image

Thumbnail /cellmap/nrs/data/jrc_mus-kidney-2/thumbnail_nuc.jpg

rinva commented 1 month ago

DOIs created model - https://doi.org/10.25378/janelia.26506354 https://figshare.com/s/aa9bf7b4f9d7bfe9d04f refined segmentations - https://doi.org/10.25378/janelia.26506534 https://figshare.com/s/e5f428be9f0a11c4c892

rinva commented 1 month ago

Ready for meshes.