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janelia-cellmap / cellmap-nuclei

Generating nucleus segmentations for FIB-SEM datasets of cells and tissues
BSD 3-Clause "New" or "Revised" License
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jrc_mus-nacc-2 #28

Open jonesa3 opened 3 weeks ago

jonesa3 commented 3 weeks ago

used s3 (64nm seemed too low for this dataset)

aemmav commented 2 weeks ago

@jonesa3 Let me know if there are any datasets marked "manual only" that you would like me to try training a model for, but I believe this one will be easier to do manually.

jonesa3 commented 2 weeks ago

thanks @aemmav ! manual seg was a good choice for this one

jonesa3 commented 2 weeks ago

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-nacc-2/s3_amira_proofread.tif

yuriyzubov commented 1 week ago

/avetissiane/tiff_slices/jrc_mus-nacc-2/s3_amira_proofread.zarr