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janelia-cellmap / cellmap-nuclei

Generating nucleus segmentations for FIB-SEM datasets of cells and tissues
BSD 3-Clause "New" or "Revised" License
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jrc_mus-nacc-3 #29

Open jonesa3 opened 3 months ago

jonesa3 commented 3 months ago

used s3 (64nm seemed too low for this dataset)

jonesa3 commented 3 months ago

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-nacc-3/s3_amira_proofread.tif

yuriyzubov commented 3 months ago

/avetissiane/tiff_slices/jrc_mus-nacc-3/s3_amira_proofread.zarr

yuriyzubov commented 2 months ago

jrc_mus-nacc-3.zarr/recon-2/labels/inference/segmentations/nuc

rinva commented 2 months ago

Image

rinva commented 1 month ago

DOI created https://doi.org/10.25378/janelia.26513212 https://figshare.com/s/bce87a9392ceeac970ab

rinva commented 1 month ago

thumbnail created and written to nrs.

nrs/data/jrc_mus-nacc-3/thumbnail_nuc.jpg