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janelia-cellmap / cellmap-nuclei

Generating nucleus segmentations for FIB-SEM datasets of cells and tissues
BSD 3-Clause "New" or "Revised" License
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jrc_mus-pancreas-3 #34

Open jonesa3 opened 5 months ago

jonesa3 commented 4 months ago

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-pancreas-3/s4_cp_masks_amira_proofread.tif

yuriyzubov commented 4 months ago

/avetissiane/tiff_slices/jrc_mus-pancreas-3/s4_cp_masks_amira_proofread.zarr

yuriyzubov commented 4 months ago

jrc_mus-pancreas-3.zarr/recon-1/labels/inference/segmentations/nuc

rinva commented 4 months ago

Image

Thumbnail /cellmap/nrs/data/jrc_mus-pancreas-3/thumbnail_nuc.jpg Ready for meshes

rinva commented 3 months ago

DOIs created model - https://doi.org/10.25378/janelia.26506471 https://figshare.com/s/9b5b3e61a6517d319bde refined segmentations - https://doi.org/10.25378/janelia.26506561 https://figshare.com/s/8979e2e1619becb7cfd2