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janelia-flyem / gala

Automatic segmentation of electron microscopy volumes
BSD 3-Clause "New" or "Revised" License
76 stars 29 forks source link

pixel.py: Updated ilastik command-line for latest release. #27

Closed stuarteberg closed 10 years ago

stuarteberg commented 10 years ago

The command-line API for ilastik has changed. I've modified the appropriate function in gala/pixel.py. I tested these changes via the following command:

./bin/gala-pixel --config-file=example/pix-config.json /tmp

which seems to work just fine. Let me know if there's some better test to try.

NOTE: I also updated the ilastik.cmake build script in BuildEM today. This gala change is coupled to the latest rev of BuildEM, so update your gala checkout and BuildEM build in tandem.