This PR does not create a docker image with old versions of libraries, but
rather updates gala to work with modern versions. Some features, such as
orientation maps, are not expected to work, but could be fixed (see the
incomplete Rag.copy() method). The server tests are also not working for some
reason.
Update library imports to more modern versions
Fix dtype issues with Cython code
Fix incorrect forward map setting
Update most of gala/agglo.py to nx2 API
More nx2 changes in agglo.py
Move agglo2 to nx2 api
use relabel_sequential from skimage
Update features to nx2
Update morpho to use relabel_sequential
Update docstring repr to np 1.14
Require viridis>=0.5 for nx2
Update test_agglo to nx2 api
Update test_features to nx2 api
Update fixtures for pytest4
Remove unused imports
'Fix' graph copy by generating new graph
Use liblinear as default LR solver to match historical results
Addresses #97
This PR does not create a docker image with old versions of libraries, but rather updates gala to work with modern versions. Some features, such as orientation maps, are not expected to work, but could be fixed (see the incomplete Rag.copy() method). The server tests are also not working for some reason.