As a premise I have a very poor background in informatic and bioinformatic.
However for my current research I wanted to test digIS which could satisfiy perfectly my needs.
I was running a genome sequence ( fasta file) without the gene_bank annotation.
I followed the instruction and everything was fine until this error
ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.
Is there something I can do on my side? It seems that the script shoudl be modified.
As a premise I have a very poor background in informatic and bioinformatic. However for my current research I wanted to test digIS which could satisfiy perfectly my needs.
I was running a genome sequence ( fasta file) without the gene_bank annotation. I followed the instruction and everything was fine until this error
ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the
molecule_type
as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.Is there something I can do on my side? It seems that the script shoudl be modified.
I would appreciate any type of suggestion
Thank you for your attention Best, Davide