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jannisspeer / snakemake-executor-plugin-htcondor

A Snakemake executor plugin for submitting jobs with HTCondor.
MIT License
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Issue with job executable and argument when using a storage plugin #15

Open jannisspeer opened 1 month ago

jannisspeer commented 1 month ago

The method format_job_exec(job), which is called in the run_job() method of the Executor object, returns a string which also contains a pip install statement when using a storage plugin. This case is not handled currently. I tested this with the xrootd storage plugin.

jannisspeer commented 1 month ago

Could we drop this pip install and just assume that the storage plugin is installed on the job nodes?