search

japonicusdb / japonicus-config

Configuration for JaponicusDB
0 stars 1 forks source link

Add bioarchive as a canto classifier for S. japonicus #100

Closed ValWood closed 1 year ago

ValWood commented 1 year ago

Probably I should put this on the Canto tracker.

ValWood commented 1 year ago

Note to self, I triaged one as other- reclassify so it doesn't get lost

ValWood commented 1 year ago

can also add the protein feature news item, maybe with oar2 as an example gene?

kimrutherford commented 1 year ago

I've added bioarchive as a triage option to JaponicusDB.

can also add the protein feature news item, maybe with oar2 as an example gene?

That's done and will be visible on Saturday morning.

ValWood commented 1 year ago

Hi @snezhkaoliferenko , there is now a BioXiv tirage option in JaponicusDB Canto. Use this for preprints because even though they have a PMID we don't curate at present (because we don't have a way to transfer the annotations over to the published version). I also triaged and sent one curation session out (to Ida) so keep a lookout for that. v

snezhkaoliferenko commented 1 year ago

thank you! sx

ps: this whole some preprints get it some don't PMIDing is just confusing.

From: Val Wood @.> Sent: 05 August 2023 09:51 To: japonicusdb/japonicus-config @.> Cc: Snezhana Oliferenko @.>; Mention @.> Subject: Re: [japonicusdb/japonicus-config] Add bioarchive as a canto classifier for S. japonicus (Issue #100)

Hi @snezhkaoliferenkohttps://github.com/snezhkaoliferenko , there is now a BioXiv tirage option in JaponicusDB Canto. Use this for preprints because even though they have a PMID we don't curate at present (because we don't have a way to transfer the annotations over to the published version). I also triaged and sent one curation session out (to Ida) so keep a lookout for that. v

— Reply to this email directly, view it on GitHubhttps://github.com/japonicusdb/japonicus-config/issues/100#issuecomment-1666444429, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AUYNMT44UMPMUMWSFZCWH7TXTYCPLANCNFSM6AAAAAA3EIGHSM. You are receiving this because you were mentioned.Message ID: @.***>

ValWood commented 1 year ago

It's annoying for us.  Two PubMed IDs for the same author/title ...and it distorts the stats. It might be better if they kept the same PubMed ID probably. It even seems to confuse PubMed , we have had all manner of problems!

On 05/08/2023 14:31, snezhkaoliferenko wrote:

thank you! sx

ps: this whole some preprints get it some don't PMIDing is just confusing.

From: Val Wood @.> Sent: 05 August 2023 09:51 To: japonicusdb/japonicus-config @.> Cc: Snezhana Oliferenko @.>; Mention @.> Subject: Re: [japonicusdb/japonicus-config] Add bioarchive as a canto classifier for S. japonicus (Issue #100)

Hi @snezhkaoliferenkohttps://github.com/snezhkaoliferenko , there is now a BioXiv tirage option in JaponicusDB Canto. Use this for preprints because even though they have a PMID we don't curate at present (because we don't have a way to transfer the annotations over to the published version). I also triaged and sent one curation session out (to Ida) so keep a lookout for that. v

— Reply to this email directly, view it on GitHubhttps://github.com/japonicusdb/japonicus-config/issues/100#issuecomment-1666444429, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AUYNMT44UMPMUMWSFZCWH7TXTYCPLANCNFSM6AAAAAA3EIGHSM. You are receiving this because you were mentioned.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/japonicusdb/japonicus-config/issues/100#issuecomment-1666507126, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABYEWKBAEZR3LLJHRJKSO6LXTZDK5ANCNFSM6AAAAAA3EIGHSM. You are receiving this because you authored the thread.Message ID: @.***>

--------------8C87PdtexMou0dv87lY61DO8 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 8bit



It's annoying for us.  Two PubMed IDs for the same author/title ...and it distorts the stats.
It might be better if they kept the same PubMed ID probably. It even seems to confuse PubMed , we have had all manner of problems!


On 05/08/2023 14:31, snezhkaoliferenko wrote:
thank you!
sx

ps: this whole some preprints get it some don't PMIDing is just confusing.



________________________________
From: Val Wood ***@***.***>
Sent: 05 August 2023 09:51
To: japonicusdb/japonicus-config ***@***.***>
Cc: Snezhana Oliferenko ***@***.***>; Mention ***@***.***>
Subject: Re: [japonicusdb/japonicus-config] Add bioarchive as a canto classifier for S. japonicus (Issue #100)


Hi @snezhkaoliferenko<https://github.com/snezhkaoliferenko> , there is now a BioXiv tirage option in JaponicusDB Canto. Use this for preprints because even though they have a PMID we don't curate at present (because we don't have a way to transfer the annotations over to the published version).
I also triaged and sent one curation session out (to Ida) so keep a lookout for that.
v

—
Reply to this email directly, view it on GitHub<https://github.com/japonicusdb/japonicus-config/issues/100#issuecomment-1666444429>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AUYNMT44UMPMUMWSFZCWH7TXTYCPLANCNFSM6AAAAAA3EIGHSM>.
You are receiving this because you were mentioned.Message ID: ***@***.***>

—
Reply to this email directly, view it on GitHub, or unsubscribe.
You are receiving this because you authored the thread.Message ID: <japonicusdb/japonicus-config/issues/100/1666507126@github.com>


--------------8C87PdtexMou0dv87lY61DO8--