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japonicusdb / japonicus-config

Configuration for JaponicusDB
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SJAG_06638 product #59

Closed ValWood closed 3 years ago

ValWood commented 3 years ago

I have been trying to troubleshoot this one for a few days.

SJAG_06638 product doesn't appear but it seems OK in the ortholog file

manual_pombe_orthologs.tsv:SJAG_06638 SPMTR.01

I can't see anything in the logs. Any ideas?

kimrutherford commented 3 years ago

I think the problem is that SPMTR.01 has two orthologs, one manual and one from Compara:

./manual_pombe_orthologs.tsv 4:SJAG_06638 SPMTR.01

./compara_pombe_orthologs.tsv 14:SJAG_01113 SPMTR.01

ValWood commented 3 years ago

So if i remove 14:SJAG_01113 SPMTR.01 from Compara and add to manual_pombe_orthologs.tsv will that work?

kimrutherford commented 3 years ago

You'd still have two orthologs for SPMTR.01 so the transfer wouldn't happen.

The only way around this is to add the name and products of SJAG_06638 and SJAG_01113 to the names_and_products file.

ValWood commented 3 years ago

Doh, I forgot!