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japonicusdb / japonicus-config

Configuration for JaponicusDB
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SJAG_07005 has no domain section #70

Closed ValWood closed 3 years ago

ValWood commented 3 years ago

https://www.japonicusdb.org/gene/SJAG_07005 does not have a domain section, but I expected it to based on https://www.pombase.org/gene/SPAC664.12c

ValWood commented 3 years ago

sequence also hits Pfam family with 1.0e-10

kimrutherford commented 3 years ago

We lookup the domains using the UniProt IDs and this gene doesn't have one. The ID isn't in Ensembl either. Is the ID new?

kimrutherford commented 3 years ago

I did a blast at Ensembl. It didn't match any proteins but it says it overlaps gene SJAG_06617 which has UniProt ID T0S2X7.

The Git log says you removed SJAG_06617 and added SJAG_07005 at the end of July.

ValWood commented 3 years ago

Duuuuurrrr Of course!