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jaredgk / PPP

Repository for pipeline code
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vcf_to_treemix.py Error #38

Open Safae1501 opened 2 years ago

Safae1501 commented 2 years ago

Hello,

I am trying to convert a vcf file to a treemix input file using the vcf_to_treemix.py script and I keep getting the following error regarding the json decoder: json.decoder.JSONDecodeError: Expecting property name enclosed in double quotes: line 196 column 15 (char 3403)

I don't really understand the error as I am new to using scripts. Can anyone help me ? Is it a problem with my input files or with the script ? Thanks

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jodyhey commented 2 years ago

Please share or send the vcf file that is causing this problem