fatal error: 'Linalg/AVX.h' file not found

[dselivanov]

Hi. Package looks awesome, want to try it. During installation got following error:

In file included from oem_dense.cpp:3: ./DataStd.h:10:10: fatal error: 'Linalg/AVX.h' file not found

include "Linalg/AVX.h"

^ 1 error generated. make: *** [oem_dense.o] Error 1 ERROR: compilation failed for package ‘oem’ removing ‘/Users/dymitriyselivanov/Library/R/3.3/library/oem’ Error: Command failed (1)

[jaredhuling]

Hi Dmitriy, what operating system are you using? What version of R? And finally does the package install on your machine from CRAN, ie install.packages("oem")?

[dselivanov]

Sorry. I'm on OS X.

sessionInfo()

R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.12.1 (Sierra) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] tools_3.3.1

Tried to install latest github version (however CRAN install.packages("oem", type = "source") produces the same ):

devtools::install_github("jaredhuling/oem")

Downloading GitHub repo jaredhuling/oem@master from URL https://api.github.com/repos/jaredhuling/oem/zipball/master Installing oem '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL \ '/private/var/folders/82/52xsqd6d3m9031wwnr5z4yyh0000gp/T/RtmpSIdDsU/devtoolsa9e75a075a4/jaredhuling-oem-567b18c' \ --library='/Users/dymitriyselivanov/Library/R/3.3/library' --install-tests installing source package ‘oem’ ... ** libs clang++-3.8 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DUSEAVX -DUSEOMP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/dymitriyselivanov/Library/R/3.3/library/Rcpp/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppEigen/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/BH/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/bigmemory/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppArmadillo/include" -DARMA_64BIT_WORD -mavx -fopenmp=libomp -fPIC -Wall -mtune=core2 -g -O2 -mtune=native -Ofast -c Rutils.cpp -o Rutils.o clang++-3.8 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DUSEAVX -DUSEOMP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/dymitriyselivanov/Library/R/3.3/library/Rcpp/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppEigen/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/BH/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/bigmemory/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppArmadillo/include" -DARMA_64BIT_WORD -mavx -fopenmp=libomp -fPIC -Wall -mtune=core2 -g -O2 -mtune=native -Ofast -c lanczos.cpp -o lanczos.o clang++-3.8 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DUSEAVX -DUSEOMP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/dymitriyselivanov/Library/R/3.3/library/Rcpp/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppEigen/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/BH/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/bigmemory/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppArmadillo/include" -DARMA_64BIT_WORD -mavx -fopenmp=libomp -fPIC -Wall -mtune=core2 -g -O2 -mtune=native -Ofast -c oem.cpp -o oem.o clang++-3.8 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DUSEAVX -DUSEOMP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/dymitriyselivanov/Library/R/3.3/library/Rcpp/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppEigen/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/BH/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/bigmemory/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppArmadillo/include" -DARMA_64BIT_WORD -mavx -fopenmp=libomp -fPIC -Wall -mtune=core2 -g -O2 -mtune=native -Ofast -c oem_big.cpp -o oem_big.o oem_big.cpp:53:15: warning: unused variable 'n' [-Wunused-variable] const int n = bMPtr->nrow(); ^ 1 warning generated. clang++-3.8 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DUSEAVX -DUSEOMP -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/dymitriyselivanov/Library/R/3.3/library/Rcpp/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppEigen/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/BH/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/bigmemory/include" -I"/Users/dymitriyselivanov/Library/R/3.3/library/RcppArmadillo/include" -DARMA_64BIT_WORD -mavx -fopenmp=libomp -fPIC -Wall -mtune=core2 -g -O2 -mtune=native -Ofast -c oem_dense.cpp -o oem_dense.o In file included from oem_dense.cpp:3: ./DataStd.h:10:10: fatal error: 'Linalg/AVX.h' file not found

include "Linalg/AVX.h"

^ 1 error generated. make: *** [oem_dense.o] Error 1 ERROR: compilation failed for package ‘oem’ removing ‘/Users/dymitriyselivanov/Library/R/3.3/library/oem’ Error: Command failed (1)

[jaredhuling]

I made some changes that hopefully fix your error. Let me know if installation works now

[dselivanov]

Thanks for quick fix. Works now.