I am new to Survival Analysis and I am trying to run the experiment using the dockerfiles but it shows the following error:
Step 5/5 : CMD [ "python", "-u", "/scripts/rsf_run.py", "/shared/data/linear_survival_data.h5", "--results_dir", "/shared/results/", "--num_trees", "100"]
---> Using cache
---> a8f230af9824
Successfully built a8f230af9824
Successfully tagged experiments_rsf:latest
Starting experiments_deepsurv_1 ... done
Starting experiments_cph_1 ... done
Starting experiments_rsf_1 ... done
Attaching to experiments_deepsurv_1, experiments_cph_1, experiments_rsf_1
deepsurv_1 | python: can't open file '/scripts/deepsurv_run.py': [Errno 2] No such file or directory
experiments_deepsurv_1 exited with code 2
rsf_1 | python: can't open file '/scripts/rsf_run.py': [Errno 2] No such file or directory
cph_1 | python: can't open file '/scripts/cph_run.py': [Errno 2] No such file or directory
experiments_rsf_1 exited with code 2
experiments_cph_1 exited with code 2
This happens with all the experiments. I downloaded the zip and my directory is \DeepSurv-master\DeepSurv-master\experiments and the scripts deepsurv_run.py, rsf_run.py and cph_run.py are in the script folder.
I am new to Survival Analysis and I am trying to run the experiment using the dockerfiles but it shows the following error:
Step 5/5 : CMD [ "python", "-u", "/scripts/rsf_run.py", "/shared/data/linear_survival_data.h5", "--results_dir", "/shared/results/", "--num_trees", "100"] ---> Using cache ---> a8f230af9824 Successfully built a8f230af9824 Successfully tagged experiments_rsf:latest Starting experiments_deepsurv_1 ... done Starting experiments_cph_1 ... done Starting experiments_rsf_1 ... done Attaching to experiments_deepsurv_1, experiments_cph_1, experiments_rsf_1 deepsurv_1 | python: can't open file '/scripts/deepsurv_run.py': [Errno 2] No such file or directory experiments_deepsurv_1 exited with code 2 rsf_1 | python: can't open file '/scripts/rsf_run.py': [Errno 2] No such file or directory cph_1 | python: can't open file '/scripts/cph_run.py': [Errno 2] No such file or directory experiments_rsf_1 exited with code 2 experiments_cph_1 exited with code 2
This happens with all the experiments. I downloaded the zip and my directory is \DeepSurv-master\DeepSurv-master\experiments and the scripts deepsurv_run.py, rsf_run.py and cph_run.py are in the script folder.
Would really appreciate any help. Thanks