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jason-neal / companion_simulations

Simulating combined host+companion spectra, and fitting to observed crires spectra.
MIT License
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Scheduled monthly dependency update for June #105

Closed pyup-bot closed 2 years ago

pyup-bot commented 2 years ago

Update astropy from 5.0.4 to 5.1.

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Links - PyPI: https://pypi.org/project/astropy - Changelog: https://pyup.io/changelogs/astropy/ - Homepage: http://astropy.org

Update matplotlib from 3.5.1 to 3.5.2.

Changelog ### 3.5.2 ``` This is the second bugfix release of the 3.5.x series. This release contains several bug-fixes and adjustments: * Add support for Windows on ARM (source-only; no wheels provided yet) * Add year to concise date formatter when displaying less than 12 months * Disable `QuadMesh` mouse cursor to avoid severe performance regression in `pcolormesh` * Delay backend selection to allow choosing one in more cases * Fix automatic layout bugs in EPS output * Fix autoscaling of `scatter` plots * Fix clearing of subfigures * Fix colorbar exponents, inversion of extensions, and use on inset axes * Fix compatibility with various NumPy-like classes (e.g., Pandas, xarray, etc.) * Fix constrained layout bugs with mixed subgrids * Fix `errorbar` with dashes * Fix errors in conversion to GTK4 and Qt6 * Fix figure options accidentally re-ordering data * Fix keyboard focus of TkAgg backend * Fix manual selection of contour labels * Fix path effects on text with whitespace * Fix `quiver` in subfigures * Fix `RangeSlider.set_val` displaying incorrectly * Fix regressions in collection data limits * Fix `stairs` with no edgecolor * Fix some leaks in Tk backends * Fix tight layout DPI confusion * Fix tool button customizability and some tool manager bugs * Only set Tk HiDPI scaling-on-map for Windows systems * Partially allow TTC font collection files by selecting the first font ```
Links - PyPI: https://pypi.org/project/matplotlib - Changelog: https://pyup.io/changelogs/matplotlib/ - Homepage: https://matplotlib.org

Update numba from 0.55.1 to 0.55.2.

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Links - PyPI: https://pypi.org/project/numba - Changelog: https://pyup.io/changelogs/numba/ - Homepage: https://numba.pydata.org

Update numpy from 1.22.3 to 1.22.4.

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Links - PyPI: https://pypi.org/project/numpy - Homepage: https://www.numpy.org

Update multiprocess from 0.70.12.2 to 0.70.13.

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Links - PyPI: https://pypi.org/project/multiprocess - Changelog: https://pyup.io/changelogs/multiprocess/ - Repo: https://github.com/uqfoundation/multiprocess

Update pandas from 1.4.1 to 1.4.2.

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Links - PyPI: https://pypi.org/project/pandas - Homepage: https://pandas.pydata.org

Update scipy from 1.8.0 to 1.8.1.

Changelog ### 1.8.1 ``` compared to `1.8.0`. Notably, usage of Pythran has been restored for Windows builds/binaries. Authors ======= * Henry Schreiner * Maximilian Nöthe * Sebastian Berg (1) * Sameer Deshmukh (1) + * Niels Doucet (1) + * DWesl (4) * Isuru Fernando (1) * Ralf Gommers (4) * Matt Haberland (1) * Andrew Nelson (1) * Dimitri Papadopoulos Orfanos (1) + * Tirth Patel (3) * Tyler Reddy (46) * Pamphile Roy (7) * Niyas Sait (1) + * H. Vetinari (2) * Warren Weckesser (1) A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete. ```
Links - PyPI: https://pypi.org/project/scipy - Changelog: https://pyup.io/changelogs/scipy/ - Repo: https://github.com/scipy/scipy/releases - Homepage: https://www.scipy.org

Update sqlalchemy from 1.4.34 to 1.4.37.

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Links - PyPI: https://pypi.org/project/sqlalchemy - Changelog: https://pyup.io/changelogs/sqlalchemy/ - Homepage: https://www.sqlalchemy.org

Update tqdm from 4.63.1 to 4.64.0.

Changelog ### 4.63.2 ``` - `rich`: expose `options` kwargs (1282) - `autonotebook`: re-enable VSCode (1309) - misc docs typos (1301, 1299) - update dev dependencies (1311) ```
Links - PyPI: https://pypi.org/project/tqdm - Changelog: https://pyup.io/changelogs/tqdm/ - Repo: https://tqdm.github.io

Update hypothesis from 6.40.2 to 6.46.10.

Changelog ### 6.46.10 ``` -------------------- This release contains some small improvements to our documentation. Thanks to Felix Divo for his contribution! ``` ### 6.46.9 ``` ------------------- This patch by Adrian Garcia Badaracco adds type annotations to some private internals (:issue:`3074`). ``` ### 6.46.8 ``` ------------------- This patch by Phillip Schanely makes changes to the :func:`~hypothesis.strategies.floats` strategy when ``min_value`` or ``max_value`` is present. Hypothesis will now be capable of generating every representable value in the bounds. You may notice that hypothesis is more likely to test values near boundaries, and values that are very close to zero. These changes also support future integrations with symbolic execution tools and fuzzers (:issue:`3086`). ``` ### 6.46.7 ``` ------------------- This patch updates the type annotations for :func:`~hypothesis.strategies.tuples` and :func:`~hypothesis.strategies.one_of` so that type-checkers require its arguments to be positional-only, and so that it no longer fails under pyright-strict mode (see :issue:`3348`). Additional changes are made to Hypothesis' internals improve pyright scans. ``` ### 6.46.6 ``` ------------------- This patch by Cheuk Ting Ho adds support for :pep:`655` ``Required`` and ``NotRequired`` as attributes of :class:`~python:typing.TypedDict` in :func:`~hypothesis.strategies.from_type` (:issue:`3339`). ``` ### 6.46.5 ``` ------------------- This patch fixes :func:`~hypothesis.extra.numpy.from_dtype` with long-precision floating-point datatypes (typecode ``g``; see :func:`numpy:numpy.typename`). ``` ### 6.46.4 ``` ------------------- This patch improves some error messages for custom signatures containing invalid parameter names (:issue:`3317`). ``` ### 6.46.3 ``` ------------------- This patch by Cheuk Ting Ho makes it an explicit error to call :func:`~hypothesis.strategies.from_type` or :func:`~hypothesis.strategies.register_type_strategy` with types that have no runtime instances (:issue:`3280`). ``` ### 6.46.2 ``` ------------------- This patch fixes silently dropping examples when the :func:`example <hypothesis.example>` decorator is applied to itself (:issue:`3319`). This was always a weird pattern, but now it works. Thanks to Ray Sogata, Keeri Tramm, and Kevin Khuong for working on this patch! ``` ### 6.46.1 ``` ------------------- This patch fixes a rare bug where we could incorrectly treat :obj:`~python:inspect.Parameter.empty` as a type annotation, if the callable had an explicitly assigned ``__signature__``. ``` ### 6.46.0 ``` ------------------- This release adds an ``allow_nil`` argument to :func:`~hypothesis.strategies.uuids`, which you can use to... generate the nil UUID. Thanks to Shlok Gandhi for the patch! ``` ### 6.45.4 ``` ------------------- This patch fixes some missing imports for certain :doc:`Ghostwritten <ghostwriter>` tests. Thanks to Mel Seto for fixing :issue:`3316`. ``` ### 6.45.3 ``` ------------------- This patch teaches :doc:`the Ghostwriter <ghostwriter>` to recognize many more common argument names (:issue:`3311`). ``` ### 6.45.2 ``` ------------------- This patch fixes :issue:`3314`, where Hypothesis would raise an internal error from :func:`~hypothesis.provisional.domains` or (only on Windows) from :func:`~hypothesis.strategies.timezones` in some rare circumstances where the installation was subtly broken. Thanks to Munir Abdinur for this contribution. ``` ### 6.45.1 ``` ------------------- This release fixes deprecation warnings about ``sre_compile`` and ``sre_parse`` imports and ``importlib.resources`` usage when running Hypothesis on Python 3.11. Thanks to Florian Bruhin for this contribution. ``` ### 6.45.0 ``` ------------------- This release updates :func:`xps.indices` by introducing an ``allow_newaxis`` argument, defaulting to ``False``. If ``allow_newaxis=True``, indices can be generated that add dimensions to arrays, which is achieved by the indexer containing ``None``. This change is to support a specification change that expand dimensions via indexing (`data-apis/array-api408 <https://github.com/data-apis/array-api/pull/408>`_). ``` ### 6.44.0 ``` ------------------- This release adds a ``names`` argument to :func:`~hypothesis.extra.pandas.indexes` and :func:`~hypothesis.extra.pandas.series`, so that you can create Pandas objects with specific or varied names. Contributed by Sam Watts. ``` ### 6.43.3 ``` ------------------- This patch updates the type annotations for :func:`given <hypothesis.given>` so that type-checkers will warn on mixed positional and keyword arguments, as well as fixing :issue:`3296`. ``` ### 6.43.2 ``` ------------------- Fixed a type annotation for ``pyright --strict`` (:issue:`3287`). ``` ### 6.43.1 ``` ------------------- This patch makes it an explicit error to call :func:`~hypothesis.strategies.register_type_strategy` with a `Pydantic GenericModel <https://pydantic-docs.helpmanual.io/usage/models/#generic-models>`__ and a callable, because ``GenericModel`` isn't actually a generic type at runtime and so you have to register each of the "parametrized versions" (actually subclasses!) manually. See :issue:`2940` for more details. ``` ### 6.43.0 ``` ------------------- This release makes it an explicit error to apply :func:`pytest.fixture <pytest:pytest.fixture>` to a function which has already been decorated with :func:`given() <hypothesis.given>`. Previously, ``pytest`` would convert your test to a fixture, and then never run it. ``` ### 6.42.3 ``` ------------------- This patch fixes :func:`~hypothesis.strategies.from_type` on a :class:`~python:typing.TypedDict` with complex annotations, defined in a file using ``from __future__ import annotations``. Thanks to Katelyn Gigante for identifying and fixing this bug! ``` ### 6.42.2 ``` ------------------- The Hypothesis pytest plugin was not outputting valid xunit2 nodes when ``--junit-xml`` was specified. This has been broken since Pytest 5.4, which changed the internal API for adding nodes to the junit report. This also fixes the issue when using hypothesis with ``--junit-xml`` and ``pytest-xdist`` where the junit xml report would not be xunit2 compatible. Now, when using with ``pytest-xdist``, the junit report will just omit the ``<properties>`` node. For more details, see `this pytest issue <https://github.com/pytest-dev/pytest/issues/1126#issuecomment-484581283>`__, `this pytest issue <https://github.com/pytest-dev/pytest/issues/7767#issuecomment-1082436256>`__, and :issue:`1935` Thanks to Brandon Chinn for this bug fix! ``` ### 6.42.1 ``` ------------------- This patch fixes pretty-printing of regular expressions in Python 3.11.0a7, and updates our vendored `list of top-level domains <https://www.iana.org/domains/root/db>`__,. ``` ### 6.42.0 ``` ------------------- This release makes ``st.functions(pure=True)`` less noisy (:issue:`3253`), and generally improves pretty-printing of functions. ``` ### 6.41.0 ``` ------------------- This release changes the implementation of :const:`~hypothesis.infer` to be an alias for :obj:`python:Ellipsis`. E.g. ``given(a=infer)`` is now equivalent to ``given(a=...)``. Furthermore, ``given(...)`` can now be specified so that :func:`given <hypothesis.given>` will infer the strategies for *all* arguments of the decorated function based on its annotations. ``` ### 6.40.3 ``` ------------------- This patch simplifies the repr of the strategies namespace returned in :func:`~hypothesis.extra.array_api.make_strategies_namespace`, e.g. .. code-block:: pycon >>> from hypothesis.extra.array_api import make_strategies_namespace >>> from numpy import array_api as xp >>> xps = make_strategies_namespace(xp) >>> xps make_strategies_namespace(numpy.array_api) ```
Links - PyPI: https://pypi.org/project/hypothesis - Changelog: https://pyup.io/changelogs/hypothesis/ - Homepage: https://hypothesis.works

Update pytest from 7.1.1 to 7.1.2.

Changelog ### 7.1.2 ``` ========================= Bug Fixes --------- - `9726 <https://github.com/pytest-dev/pytest/issues/9726>`_: An unnecessary ``numpy`` import inside :func:`pytest.approx` was removed. - `9820 <https://github.com/pytest-dev/pytest/issues/9820>`_: Fix comparison of ``dataclasses`` with ``InitVar``. - `9869 <https://github.com/pytest-dev/pytest/issues/9869>`_: Increase ``stacklevel`` for the ``NODE_CTOR_FSPATH_ARG`` deprecation to point to the user's code, not pytest. - `9871 <https://github.com/pytest-dev/pytest/issues/9871>`_: Fix a bizarre (and fortunately rare) bug where the `temp_path` fixture could raise an internal error while attempting to get the current user's username. ```
Links - PyPI: https://pypi.org/project/pytest - Changelog: https://pyup.io/changelogs/pytest/ - Homepage: https://docs.pytest.org/en/latest/
pyup-bot commented 2 years ago

Closing this in favor of #107