Changelog
### 1.17.1
```
==========================
This release contains a number of fixes for bugs reported against NumPy 1.17.0
along with a few documentation and build improvements. The Python versions
supported are 3.5-3.7, note that Python 2.7 has been dropped. Python 3.8b3
should work with the released source packages, but there are no future
guarantees.
Downstream developers should use Cython >= 0.29.13 for Python 3.8 support and
OpenBLAS >= 3.7 to avoid problems on the Skylake architecture. The NumPy wheels
on PyPI are built from the OpenBLAS development branch in order to avoid those
problems.
Contributors
============
A total of 17 people contributed to this release. People with a "+" by their
names contributed a patch for the first time.
* Alexander Jung +
* Allan Haldane
* Charles Harris
* Eric Wieser
* Giuseppe Cuccu +
* Hiroyuki V. Yamazaki
* Jérémie du Boisberranger
* Kmol Yuan +
* Matti Picus
* Max Bolingbroke +
* Maxwell Aladago +
* Oleksandr Pavlyk
* Peter Andreas Entschev
* Sergei Lebedev
* Seth Troisi +
* Vladimir Pershin +
* Warren Weckesser
Pull requests merged
====================
A total of 24 pull requests were merged for this release.
* `14156 <https://github.com/numpy/numpy/pull/14156>`__: TST: Allow fuss in testing strided/non-strided exp/log loops
* `14157 <https://github.com/numpy/numpy/pull/14157>`__: BUG: avx2_scalef_ps must be static
* `14158 <https://github.com/numpy/numpy/pull/14158>`__: BUG: Remove stray print that causes a SystemError on python 3.7.
* `14159 <https://github.com/numpy/numpy/pull/14159>`__: BUG: Fix DeprecationWarning in python 3.8.
* `14160 <https://github.com/numpy/numpy/pull/14160>`__: BLD: Add missing gcd/lcm definitions to npy_math.h
* `14161 <https://github.com/numpy/numpy/pull/14161>`__: DOC, BUILD: cleanups and fix (again) 'build dist'
* `14166 <https://github.com/numpy/numpy/pull/14166>`__: TST: Add 3.8-dev to travisCI testing.
* `14194 <https://github.com/numpy/numpy/pull/14194>`__: BUG: Remove the broken clip wrapper (Backport)
* `14198 <https://github.com/numpy/numpy/pull/14198>`__: DOC: Fix hermitian argument docs in svd.
* `14199 <https://github.com/numpy/numpy/pull/14199>`__: MAINT: Workaround for Intel compiler bug leading to failing test
* `14200 <https://github.com/numpy/numpy/pull/14200>`__: TST: Clean up of test_pocketfft.py
* `14201 <https://github.com/numpy/numpy/pull/14201>`__: BUG: Make advanced indexing result on read-only subclass writeable...
* `14236 <https://github.com/numpy/numpy/pull/14236>`__: BUG: Fixed default BitGenerator name
* `14237 <https://github.com/numpy/numpy/pull/14237>`__: ENH: add c-imported modules for freeze analysis in np.random
* `14296 <https://github.com/numpy/numpy/pull/14296>`__: TST: Pin pytest version to 5.0.1
* `14301 <https://github.com/numpy/numpy/pull/14301>`__: BUG: Fix leak in the f2py-generated module init and `PyMem_Del`...
* `14302 <https://github.com/numpy/numpy/pull/14302>`__: BUG: Fix formatting error in exception message
* `14307 <https://github.com/numpy/numpy/pull/14307>`__: MAINT: random: Match type of SeedSequence.pool_size to DEFAULT_POOL_SIZE.
* `14308 <https://github.com/numpy/numpy/pull/14308>`__: BUG: Fix numpy.random bug in platform detection
* `14309 <https://github.com/numpy/numpy/pull/14309>`__: ENH: Enable huge pages in all Linux builds
* `14330 <https://github.com/numpy/numpy/pull/14330>`__: BUG: Fix segfault in `random.permutation(x)` when x is a string.
* `14338 <https://github.com/numpy/numpy/pull/14338>`__: BUG: don't fail when lexsorting some empty arrays (14228)
* `14339 <https://github.com/numpy/numpy/pull/14339>`__: BUG: Fix misuse of .names and .fields in various places (backport...
* `14345 <https://github.com/numpy/numpy/pull/14345>`__: BUG: fix behavior of structured_to_unstructured on non-trivial...
* `14350 <https://github.com/numpy/numpy/pull/14350>`__: REL: Prepare 1.17.1 release
==========================
```
Links
- PyPI: https://pypi.org/project/numpy
- Changelog: https://pyup.io/changelogs/numpy/
- Homepage: https://www.numpy.org
Changelog
### 1.3.8
```
:released: August 27, 2019
.. change::
:tags: bug, orm
:tickets: 4823
Fixed bug where :class:`.Load` objects were not pickleable due to
mapper/relationship state in the internal context dictionary. These
objects are now converted to picklable using similar techniques as that of
other elements within the loader option system that have long been
serializable.
.. change::
:tags: bug, postgresql
:tickets: 4623
Revised the approach for the just added support for the psycopg2
"execute_values()" feature added in 1.3.7 for :ticket:`4623`. The approach
relied upon a regular expression that would fail to match for a more
complex INSERT statement such as one which had subqueries involved. The
new approach matches exactly the string that was rendered as the VALUES
clause.
.. change::
:tags: usecase, orm
:tickets: 4285
Added support for the use of an :class:`.Enum` datatype using Python
pep-435 enumeration objects as values for use as a primary key column
mapped by the ORM. As these values are not inherently sortable, as
required by the ORM for primary keys, a new
:attr:`.TypeEngine.sort_key_function` attribute is added to the typing
system which allows any SQL type to implement a sorting for Python objects
of its type which is consulted by the unit of work. The :class:`.Enum`
type then defines this using the database value of a given enumeration.
The sorting scheme can be also be redefined by passing a callable to the
:paramref:`.Enum.sort_key_function` parameter. Pull request courtesy
Nicolas Caniart.
.. change::
:tags: bug, engine
:tickets: 4807
Fixed an issue whereby if the dialect "initialize" process which occurs on
first connect would encounter an unexpected exception, the initialize
process would fail to complete and then no longer attempt on subsequent
connection attempts, leaving the dialect in an un-initialized, or partially
initialized state, within the scope of parameters that need to be
established based on inspection of a live connection. The "invoke once"
logic in the event system has been reworked to accommodate for this
occurrence using new, private API features that establish an "exec once"
hook that will continue to allow the initializer to fire off on subsequent
connections, until it completes without raising an exception. This does not
impact the behavior of the existing ``once=True`` flag within the event
system.
.. change::
:tags: bug, sqlite, reflection
:tickets: 4810
Fixed bug where a FOREIGN KEY that was set up to refer to the parent table
by table name only without the column names would not correctly be
reflected as far as setting up the "referred columns", since SQLite's
PRAGMA does not report on these columns if they weren't given explicitly.
For some reason this was harcoded to assume the name of the local column,
which might work for some cases but is not correct. The new approach
reflects the primary key of the referred table and uses the constraint
columns list as the referred columns list, if the remote column(s) aren't
present in the reflected pragma directly.
.. change::
:tags: bug, postgresql
:tickets: 4822
Fixed bug where Postgresql operators such as
:meth:`.postgresql.ARRAY.Comparator.contains` and
:meth:`.postgresql.ARRAY.Comparator.contained_by` would fail to function
correctly for non-integer values when used against a
:class:`.postgresql.array` object, due to an erroneous assert statement.
.. change::
:tags: feature, engine
:tickets: 4815
Added new parameter :paramref:`.create_engine.hide_parameters` which when
set to True will cause SQL parameters to no longer be logged, nor rendered
in the string representation of a :class:`.StatementError` object.
.. change::
:tags: usecase, postgresql
:tickets: 4824
Added support for reflection of CHECK constraints that include the special
PostgreSQL qualifier "NOT VALID", which can be present for CHECK
constraints that were added to an exsiting table with the directive that
they not be applied to existing data in the table. The PostgreSQL
dictionary for CHECK constraints as returned by
:meth:`.Inspector.get_check_constraints` may include an additional entry
``dialect_options`` which within will contain an entry ``"not_valid":
True`` if this symbol is detected. Pull request courtesy Bill Finn.
.. changelog::
```
### 1.3.7
```
:released: August 14, 2019
.. change::
:tags: bug, sql
:tickets: 4778
Fixed issue where :class:`.Index` object which contained a mixture of
functional expressions which were not resolvable to a particular column,
in combination with string-based column names, would fail to initialize
its internal state correctly leading to failures during DDL compilation.
.. change::
:tags: bug, sqlite
:tickets: 4798
The dialects that support json are supposed to take arguments
``json_serializer`` and ``json_deserializer`` at the create_engine() level,
however the SQLite dialect calls them ``_json_serilizer`` and
``_json_deserilalizer``. The names have been corrected, the old names are
accepted with a change warning, and these parameters are now documented as
:paramref:`.create_engine.json_serializer` and
:paramref:`.create_engine.json_deserializer`.
.. change::
:tags: bug, mysql
:tickets: 4804
The MySQL dialects will emit "SET NAMES" at the start of a connection when
charset is given to the MySQL driver, to appease an apparent behavior
observed in MySQL 8.0 that raises a collation error when a UNION includes
string columns unioned against columns of the form CAST(NULL AS CHAR(..)),
which is what SQLAlchemy's polymorphic_union function does. The issue
seems to have affected PyMySQL for at least a year, however has recently
appeared as of mysqlclient 1.4.4 based on changes in how this DBAPI creates
a connection. As the presence of this directive impacts three separate
MySQL charset settings which each have intricate effects based on their
presense, SQLAlchemy will now emit the directive on new connections to
ensure correct behavior.
.. change::
:tags: usecase, postgresql
:tickets: 4623
Added new dialect flag for the psycopg2 dialect, ``executemany_mode`` which
supersedes the previous experimental ``use_batch_mode`` flag.
``executemany_mode`` supports both the "execute batch" and "execute values"
functions provided by psycopg2, the latter which is used for compiled
:func:`.insert` constructs. Pull request courtesy Yuval Dinari.
.. seealso::
:ref:`psycopg2_executemany_mode`
.. change::
:tags: bug, sql
:tickets: 4787
Fixed bug where :meth:`.TypeEngine.column_expression` method would not be
applied to subsequent SELECT statements inside of a UNION or other
:class:`.CompoundSelect`, even though the SELECT statements are rendered at
the topmost level of the statement. New logic now differentiates between
rendering the column expression, which is needed for all SELECTs in the
list, vs. gathering the returned data type for the result row, which is
needed only for the first SELECT.
.. change::
:tags: bug, sqlite
:tickets: 4793
Fixed bug where usage of "PRAGMA table_info" in SQLite dialect meant that
reflection features to detect for table existence, list of table columns,
and list of foreign keys, would default to any table in any attached
database, when no schema name was given and the table did not exist in the
base schema. The fix explicitly runs PRAGMA for the 'main' schema and then
the 'temp' schema if the 'main' returned no rows, to maintain the behavior
of tables + temp tables in the "no schema" namespace, attached tables only
in the "schema" namespace.
.. change::
:tags: bug, sql
:tickets: 4780
Fixed issue where internal cloning of SELECT constructs could lead to a key
error if the copy of the SELECT changed its state such that its list of
columns changed. This was observed to be occurring in some ORM scenarios
which may be unique to 1.3 and above, so is partially a regression fix.
.. change::
:tags: bug, orm
:tickets: 4777
Fixed regression caused by new selectinload for many-to-one logic where
a primaryjoin condition not based on real foreign keys would cause
KeyError if a related object did not exist for a given key value on the
parent object.
.. change::
:tags: usecase, mysql
:tickets: 4783
Added reserved words ARRAY and MEMBER to the MySQL reserved words list, as
MySQL 8.0 has now made these reserved.
.. change::
:tags: bug, events
:tickets: 4794
Fixed issue in event system where using the ``once=True`` flag with
dynamically generated listener functions would cause event registration of
future events to fail if those listener functions were garbage collected
after they were used, due to an assumption that a listened function is
strongly referenced. The "once" wrapped is now modified to strongly
reference the inner function persistently, and documentation is updated
that using "once" does not imply automatic de-registration of listener
functions.
.. change::
:tags: bug, mysql
:tickets: 4751
Added another fix for an upstream MySQL 8 issue where a case sensitive
table name is reported incorrectly in foreign key constraint reflection,
this is an extension of the fix first added for :ticket:`4344` which
affects a case sensitive column name. The new issue occurs through MySQL
8.0.17, so the general logic of the 88718 fix remains in place.
.. seealso::
https://bugs.mysql.com/bug.php?id=96365 - upstream bug
.. change::
:tags: usecase, mssql
:tickets: 4782
Added new :func:`.mssql.try_cast` construct for SQL Server which emits
"TRY_CAST" syntax. Pull request courtesy Leonel Atencio.
.. change::
:tags: bug, orm
:tickets: 4803
Fixed bug where using :meth:`.Query.first` or a slice expression in
conjunction with a query that has an expression based "offset" applied
would raise TypeError, due to an "or" conditional against "offset" that did
not expect it to be a SQL expression as opposed to an integer or None.
.. changelog::
```
Links
- PyPI: https://pypi.org/project/sqlalchemy
- Changelog: https://pyup.io/changelogs/sqlalchemy/
- Homepage: http://www.sqlalchemy.org
Changelog
### 5.1.2
```
=========================
Bug Fixes
---------
- `2270 <https://github.com/pytest-dev/pytest/issues/2270>`_: Fixed ``self`` reference in function-scoped fixtures defined plugin classes: previously ``self``
would be a reference to a *test* class, not the *plugin* class.
- `570 <https://github.com/pytest-dev/pytest/issues/570>`_: Fixed long standing issue where fixture scope was not respected when indirect fixtures were used during
parametrization.
- `5782 <https://github.com/pytest-dev/pytest/issues/5782>`_: Fix decoding error when printing an error response from ``--pastebin``.
- `5786 <https://github.com/pytest-dev/pytest/issues/5786>`_: Chained exceptions in test and collection reports are now correctly serialized, allowing plugins like
``pytest-xdist`` to display them properly.
- `5792 <https://github.com/pytest-dev/pytest/issues/5792>`_: Windows: Fix error that occurs in certain circumstances when loading
``conftest.py`` from a working directory that has casing other than the one stored
in the filesystem (e.g., ``c:\test`` instead of ``C:\test``).
```
### 5.1.1
```
=========================
Bug Fixes
---------
- `5751 <https://github.com/pytest-dev/pytest/issues/5751>`_: Fixed ``TypeError`` when importing pytest on Python 3.5.0 and 3.5.1.
```
### 5.1.0
```
=========================
Removals
--------
- `5180 <https://github.com/pytest-dev/pytest/issues/5180>`_: As per our policy, the following features have been deprecated in the 4.X series and are now
removed:
* ``Request.getfuncargvalue``: use ``Request.getfixturevalue`` instead.
* ``pytest.raises`` and ``pytest.warns`` no longer support strings as the second argument.
* ``message`` parameter of ``pytest.raises``.
* ``pytest.raises``, ``pytest.warns`` and ``ParameterSet.param`` now use native keyword-only
syntax. This might change the exception message from previous versions, but they still raise
``TypeError`` on unknown keyword arguments as before.
* ``pytest.config`` global variable.
* ``tmpdir_factory.ensuretemp`` method.
* ``pytest_logwarning`` hook.
* ``RemovedInPytest4Warning`` warning type.
* ``request`` is now a reserved name for fixtures.
For more information consult
`Deprecations and Removals <https://docs.pytest.org/en/latest/deprecations.html>`__ in the docs.
- `5565 <https://github.com/pytest-dev/pytest/issues/5565>`_: Removed unused support code for `unittest2 <https://pypi.org/project/unittest2/>`__.
The ``unittest2`` backport module is no longer
necessary since Python 3.3+, and the small amount of code in pytest to support it also doesn't seem
to be used: after removed, all tests still pass unchanged.
Although our policy is to introduce a deprecation period before removing any features or support
for third party libraries, because this code is apparently not used
at all (even if ``unittest2`` is used by a test suite executed by pytest), it was decided to
remove it in this release.
If you experience a regression because of this, please
`file an issue <https://github.com/pytest-dev/pytest/issues/new>`__.
- `5615 <https://github.com/pytest-dev/pytest/issues/5615>`_: ``pytest.fail``, ``pytest.xfail`` and ``pytest.skip`` no longer support bytes for the message argument.
This was supported for Python 2 where it was tempting to use ``"message"``
instead of ``u"message"``.
Python 3 code is unlikely to pass ``bytes`` to these functions. If you do,
please decode it to an ``str`` beforehand.
Features
--------
- `5564 <https://github.com/pytest-dev/pytest/issues/5564>`_: New ``Config.invocation_args`` attribute containing the unchanged arguments passed to ``pytest.main()``.
- `5576 <https://github.com/pytest-dev/pytest/issues/5576>`_: New `NUMBER <https://docs.pytest.org/en/latest/doctest.htmlusing-doctest-options>`__
option for doctests to ignore irrelevant differences in floating-point numbers.
Inspired by Sébastien Boisgérault's `numtest <https://github.com/boisgera/numtest>`__
extension for doctest.
Improvements
------------
- `5471 <https://github.com/pytest-dev/pytest/issues/5471>`_: JUnit XML now includes a timestamp and hostname in the testsuite tag.
- `5707 <https://github.com/pytest-dev/pytest/issues/5707>`_: Time taken to run the test suite now includes a human-readable representation when it takes over
60 seconds, for example::
===== 2 failed in 102.70s (0:01:42) =====
Bug Fixes
---------
- `4344 <https://github.com/pytest-dev/pytest/issues/4344>`_: Fix RuntimeError/StopIteration when trying to collect package with "__init__.py" only.
- `5115 <https://github.com/pytest-dev/pytest/issues/5115>`_: Warnings issued during ``pytest_configure`` are explicitly not treated as errors, even if configured as such, because it otherwise completely breaks pytest.
- `5477 <https://github.com/pytest-dev/pytest/issues/5477>`_: The XML file produced by ``--junitxml`` now correctly contain a ``<testsuites>`` root element.
- `5523 <https://github.com/pytest-dev/pytest/issues/5523>`_: Fixed using multiple short options together in the command-line (for example ``-vs``) in Python 3.8+.
- `5524 <https://github.com/pytest-dev/pytest/issues/5524>`_: Fix issue where ``tmp_path`` and ``tmpdir`` would not remove directories containing files marked as read-only,
which could lead to pytest crashing when executed a second time with the ``--basetemp`` option.
- `5537 <https://github.com/pytest-dev/pytest/issues/5537>`_: Replace ``importlib_metadata`` backport with ``importlib.metadata`` from the
standard library on Python 3.8+.
- `5578 <https://github.com/pytest-dev/pytest/issues/5578>`_: Improve type checking for some exception-raising functions (``pytest.xfail``, ``pytest.skip``, etc)
so they provide better error messages when users meant to use marks (for example ``pytest.xfail``
instead of ``pytest.mark.xfail``).
- `5606 <https://github.com/pytest-dev/pytest/issues/5606>`_: Fixed internal error when test functions were patched with objects that cannot be compared
for truth values against others, like ``numpy`` arrays.
- `5634 <https://github.com/pytest-dev/pytest/issues/5634>`_: ``pytest.exit`` is now correctly handled in ``unittest`` cases.
This makes ``unittest`` cases handle ``quit`` from pytest's pdb correctly.
- `5650 <https://github.com/pytest-dev/pytest/issues/5650>`_: Improved output when parsing an ini configuration file fails.
- `5701 <https://github.com/pytest-dev/pytest/issues/5701>`_: Fix collection of ``staticmethod`` objects defined with ``functools.partial``.
- `5734 <https://github.com/pytest-dev/pytest/issues/5734>`_: Skip async generator test functions, and update the warning message to refer to ``async def`` functions.
Improved Documentation
----------------------
- `5669 <https://github.com/pytest-dev/pytest/issues/5669>`_: Add docstring for ``Testdir.copy_example``.
Trivial/Internal Changes
------------------------
- `5095 <https://github.com/pytest-dev/pytest/issues/5095>`_: XML files of the ``xunit2`` family are now validated against the schema by pytest's own test suite
to avoid future regressions.
- `5516 <https://github.com/pytest-dev/pytest/issues/5516>`_: Cache node splitting function which can improve collection performance in very large test suites.
- `5603 <https://github.com/pytest-dev/pytest/issues/5603>`_: Simplified internal ``SafeRepr`` class and removed some dead code.
- `5664 <https://github.com/pytest-dev/pytest/issues/5664>`_: When invoking pytest's own testsuite with ``PYTHONDONTWRITEBYTECODE=1``,
the ``test_xfail_handling`` test no longer fails.
- `5684 <https://github.com/pytest-dev/pytest/issues/5684>`_: Replace manual handling of ``OSError.errno`` in the codebase by new ``OSError`` subclasses (``PermissionError``, ``FileNotFoundError``, etc.).
```
Links
- PyPI: https://pypi.org/project/pytest
- Changelog: https://pyup.io/changelogs/pytest/
- Homepage: https://docs.pytest.org/en/latest/
pyup-bot
commented
4 years ago
Update ephem from 3.7.6.0 to 3.7.7.0.
The bot wasn't able to find a changelog for this release. Got an idea?
Links
- PyPI: https://pypi.org/project/ephem - Homepage: http://rhodesmill.org/pyephem/Update numba from 0.45.0 to 0.45.1.
Changelog
### 0.45.1 ``` -------------- This patch release addresses some regressions reported in the 0.45.0 release and ```Links
- PyPI: https://pypi.org/project/numba - Changelog: https://pyup.io/changelogs/numba/ - Repo: http://numba.github.comUpdate numpy from 1.17.0 to 1.17.1.
Changelog
### 1.17.1 ``` ========================== This release contains a number of fixes for bugs reported against NumPy 1.17.0 along with a few documentation and build improvements. The Python versions supported are 3.5-3.7, note that Python 2.7 has been dropped. Python 3.8b3 should work with the released source packages, but there are no future guarantees. Downstream developers should use Cython >= 0.29.13 for Python 3.8 support and OpenBLAS >= 3.7 to avoid problems on the Skylake architecture. The NumPy wheels on PyPI are built from the OpenBLAS development branch in order to avoid those problems. Contributors ============ A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time. * Alexander Jung + * Allan Haldane * Charles Harris * Eric Wieser * Giuseppe Cuccu + * Hiroyuki V. Yamazaki * Jérémie du Boisberranger * Kmol Yuan + * Matti Picus * Max Bolingbroke + * Maxwell Aladago + * Oleksandr Pavlyk * Peter Andreas Entschev * Sergei Lebedev * Seth Troisi + * Vladimir Pershin + * Warren Weckesser Pull requests merged ==================== A total of 24 pull requests were merged for this release. * `14156 <https://github.com/numpy/numpy/pull/14156>`__: TST: Allow fuss in testing strided/non-strided exp/log loops * `14157 <https://github.com/numpy/numpy/pull/14157>`__: BUG: avx2_scalef_ps must be static * `14158 <https://github.com/numpy/numpy/pull/14158>`__: BUG: Remove stray print that causes a SystemError on python 3.7. * `14159 <https://github.com/numpy/numpy/pull/14159>`__: BUG: Fix DeprecationWarning in python 3.8. * `14160 <https://github.com/numpy/numpy/pull/14160>`__: BLD: Add missing gcd/lcm definitions to npy_math.h * `14161 <https://github.com/numpy/numpy/pull/14161>`__: DOC, BUILD: cleanups and fix (again) 'build dist' * `14166 <https://github.com/numpy/numpy/pull/14166>`__: TST: Add 3.8-dev to travisCI testing. * `14194 <https://github.com/numpy/numpy/pull/14194>`__: BUG: Remove the broken clip wrapper (Backport) * `14198 <https://github.com/numpy/numpy/pull/14198>`__: DOC: Fix hermitian argument docs in svd. * `14199 <https://github.com/numpy/numpy/pull/14199>`__: MAINT: Workaround for Intel compiler bug leading to failing test * `14200 <https://github.com/numpy/numpy/pull/14200>`__: TST: Clean up of test_pocketfft.py * `14201 <https://github.com/numpy/numpy/pull/14201>`__: BUG: Make advanced indexing result on read-only subclass writeable... * `14236 <https://github.com/numpy/numpy/pull/14236>`__: BUG: Fixed default BitGenerator name * `14237 <https://github.com/numpy/numpy/pull/14237>`__: ENH: add c-imported modules for freeze analysis in np.random * `14296 <https://github.com/numpy/numpy/pull/14296>`__: TST: Pin pytest version to 5.0.1 * `14301 <https://github.com/numpy/numpy/pull/14301>`__: BUG: Fix leak in the f2py-generated module init and `PyMem_Del`... * `14302 <https://github.com/numpy/numpy/pull/14302>`__: BUG: Fix formatting error in exception message * `14307 <https://github.com/numpy/numpy/pull/14307>`__: MAINT: random: Match type of SeedSequence.pool_size to DEFAULT_POOL_SIZE. * `14308 <https://github.com/numpy/numpy/pull/14308>`__: BUG: Fix numpy.random bug in platform detection * `14309 <https://github.com/numpy/numpy/pull/14309>`__: ENH: Enable huge pages in all Linux builds * `14330 <https://github.com/numpy/numpy/pull/14330>`__: BUG: Fix segfault in `random.permutation(x)` when x is a string. * `14338 <https://github.com/numpy/numpy/pull/14338>`__: BUG: don't fail when lexsorting some empty arrays (14228) * `14339 <https://github.com/numpy/numpy/pull/14339>`__: BUG: Fix misuse of .names and .fields in various places (backport... * `14345 <https://github.com/numpy/numpy/pull/14345>`__: BUG: fix behavior of structured_to_unstructured on non-trivial... * `14350 <https://github.com/numpy/numpy/pull/14350>`__: REL: Prepare 1.17.1 release ========================== ```Links
- PyPI: https://pypi.org/project/numpy - Changelog: https://pyup.io/changelogs/numpy/ - Homepage: https://www.numpy.orgUpdate pandas from 0.25.0 to 0.25.1.
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- PyPI: https://pypi.org/project/pandas - Homepage: http://pandas.pydata.orgUpdate scipy from 1.3.0 to 1.3.1.
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- PyPI: https://pypi.org/project/scipy - Changelog: https://pyup.io/changelogs/scipy/ - Repo: https://github.com/scipy/scipy/releases - Homepage: https://www.scipy.orgUpdate sqlalchemy from 1.3.6 to 1.3.8.
Changelog
### 1.3.8 ``` :released: August 27, 2019 .. change:: :tags: bug, orm :tickets: 4823 Fixed bug where :class:`.Load` objects were not pickleable due to mapper/relationship state in the internal context dictionary. These objects are now converted to picklable using similar techniques as that of other elements within the loader option system that have long been serializable. .. change:: :tags: bug, postgresql :tickets: 4623 Revised the approach for the just added support for the psycopg2 "execute_values()" feature added in 1.3.7 for :ticket:`4623`. The approach relied upon a regular expression that would fail to match for a more complex INSERT statement such as one which had subqueries involved. The new approach matches exactly the string that was rendered as the VALUES clause. .. change:: :tags: usecase, orm :tickets: 4285 Added support for the use of an :class:`.Enum` datatype using Python pep-435 enumeration objects as values for use as a primary key column mapped by the ORM. As these values are not inherently sortable, as required by the ORM for primary keys, a new :attr:`.TypeEngine.sort_key_function` attribute is added to the typing system which allows any SQL type to implement a sorting for Python objects of its type which is consulted by the unit of work. The :class:`.Enum` type then defines this using the database value of a given enumeration. The sorting scheme can be also be redefined by passing a callable to the :paramref:`.Enum.sort_key_function` parameter. Pull request courtesy Nicolas Caniart. .. change:: :tags: bug, engine :tickets: 4807 Fixed an issue whereby if the dialect "initialize" process which occurs on first connect would encounter an unexpected exception, the initialize process would fail to complete and then no longer attempt on subsequent connection attempts, leaving the dialect in an un-initialized, or partially initialized state, within the scope of parameters that need to be established based on inspection of a live connection. The "invoke once" logic in the event system has been reworked to accommodate for this occurrence using new, private API features that establish an "exec once" hook that will continue to allow the initializer to fire off on subsequent connections, until it completes without raising an exception. This does not impact the behavior of the existing ``once=True`` flag within the event system. .. change:: :tags: bug, sqlite, reflection :tickets: 4810 Fixed bug where a FOREIGN KEY that was set up to refer to the parent table by table name only without the column names would not correctly be reflected as far as setting up the "referred columns", since SQLite's PRAGMA does not report on these columns if they weren't given explicitly. For some reason this was harcoded to assume the name of the local column, which might work for some cases but is not correct. The new approach reflects the primary key of the referred table and uses the constraint columns list as the referred columns list, if the remote column(s) aren't present in the reflected pragma directly. .. change:: :tags: bug, postgresql :tickets: 4822 Fixed bug where Postgresql operators such as :meth:`.postgresql.ARRAY.Comparator.contains` and :meth:`.postgresql.ARRAY.Comparator.contained_by` would fail to function correctly for non-integer values when used against a :class:`.postgresql.array` object, due to an erroneous assert statement. .. change:: :tags: feature, engine :tickets: 4815 Added new parameter :paramref:`.create_engine.hide_parameters` which when set to True will cause SQL parameters to no longer be logged, nor rendered in the string representation of a :class:`.StatementError` object. .. change:: :tags: usecase, postgresql :tickets: 4824 Added support for reflection of CHECK constraints that include the special PostgreSQL qualifier "NOT VALID", which can be present for CHECK constraints that were added to an exsiting table with the directive that they not be applied to existing data in the table. The PostgreSQL dictionary for CHECK constraints as returned by :meth:`.Inspector.get_check_constraints` may include an additional entry ``dialect_options`` which within will contain an entry ``"not_valid": True`` if this symbol is detected. Pull request courtesy Bill Finn. .. changelog:: ``` ### 1.3.7 ``` :released: August 14, 2019 .. change:: :tags: bug, sql :tickets: 4778 Fixed issue where :class:`.Index` object which contained a mixture of functional expressions which were not resolvable to a particular column, in combination with string-based column names, would fail to initialize its internal state correctly leading to failures during DDL compilation. .. change:: :tags: bug, sqlite :tickets: 4798 The dialects that support json are supposed to take arguments ``json_serializer`` and ``json_deserializer`` at the create_engine() level, however the SQLite dialect calls them ``_json_serilizer`` and ``_json_deserilalizer``. The names have been corrected, the old names are accepted with a change warning, and these parameters are now documented as :paramref:`.create_engine.json_serializer` and :paramref:`.create_engine.json_deserializer`. .. change:: :tags: bug, mysql :tickets: 4804 The MySQL dialects will emit "SET NAMES" at the start of a connection when charset is given to the MySQL driver, to appease an apparent behavior observed in MySQL 8.0 that raises a collation error when a UNION includes string columns unioned against columns of the form CAST(NULL AS CHAR(..)), which is what SQLAlchemy's polymorphic_union function does. The issue seems to have affected PyMySQL for at least a year, however has recently appeared as of mysqlclient 1.4.4 based on changes in how this DBAPI creates a connection. As the presence of this directive impacts three separate MySQL charset settings which each have intricate effects based on their presense, SQLAlchemy will now emit the directive on new connections to ensure correct behavior. .. change:: :tags: usecase, postgresql :tickets: 4623 Added new dialect flag for the psycopg2 dialect, ``executemany_mode`` which supersedes the previous experimental ``use_batch_mode`` flag. ``executemany_mode`` supports both the "execute batch" and "execute values" functions provided by psycopg2, the latter which is used for compiled :func:`.insert` constructs. Pull request courtesy Yuval Dinari. .. seealso:: :ref:`psycopg2_executemany_mode` .. change:: :tags: bug, sql :tickets: 4787 Fixed bug where :meth:`.TypeEngine.column_expression` method would not be applied to subsequent SELECT statements inside of a UNION or other :class:`.CompoundSelect`, even though the SELECT statements are rendered at the topmost level of the statement. New logic now differentiates between rendering the column expression, which is needed for all SELECTs in the list, vs. gathering the returned data type for the result row, which is needed only for the first SELECT. .. change:: :tags: bug, sqlite :tickets: 4793 Fixed bug where usage of "PRAGMA table_info" in SQLite dialect meant that reflection features to detect for table existence, list of table columns, and list of foreign keys, would default to any table in any attached database, when no schema name was given and the table did not exist in the base schema. The fix explicitly runs PRAGMA for the 'main' schema and then the 'temp' schema if the 'main' returned no rows, to maintain the behavior of tables + temp tables in the "no schema" namespace, attached tables only in the "schema" namespace. .. change:: :tags: bug, sql :tickets: 4780 Fixed issue where internal cloning of SELECT constructs could lead to a key error if the copy of the SELECT changed its state such that its list of columns changed. This was observed to be occurring in some ORM scenarios which may be unique to 1.3 and above, so is partially a regression fix. .. change:: :tags: bug, orm :tickets: 4777 Fixed regression caused by new selectinload for many-to-one logic where a primaryjoin condition not based on real foreign keys would cause KeyError if a related object did not exist for a given key value on the parent object. .. change:: :tags: usecase, mysql :tickets: 4783 Added reserved words ARRAY and MEMBER to the MySQL reserved words list, as MySQL 8.0 has now made these reserved. .. change:: :tags: bug, events :tickets: 4794 Fixed issue in event system where using the ``once=True`` flag with dynamically generated listener functions would cause event registration of future events to fail if those listener functions were garbage collected after they were used, due to an assumption that a listened function is strongly referenced. The "once" wrapped is now modified to strongly reference the inner function persistently, and documentation is updated that using "once" does not imply automatic de-registration of listener functions. .. change:: :tags: bug, mysql :tickets: 4751 Added another fix for an upstream MySQL 8 issue where a case sensitive table name is reported incorrectly in foreign key constraint reflection, this is an extension of the fix first added for :ticket:`4344` which affects a case sensitive column name. The new issue occurs through MySQL 8.0.17, so the general logic of the 88718 fix remains in place. .. seealso:: https://bugs.mysql.com/bug.php?id=96365 - upstream bug .. change:: :tags: usecase, mssql :tickets: 4782 Added new :func:`.mssql.try_cast` construct for SQL Server which emits "TRY_CAST" syntax. Pull request courtesy Leonel Atencio. .. change:: :tags: bug, orm :tickets: 4803 Fixed bug where using :meth:`.Query.first` or a slice expression in conjunction with a query that has an expression based "offset" applied would raise TypeError, due to an "or" conditional against "offset" that did not expect it to be a SQL expression as opposed to an integer or None. .. changelog:: ```Links
- PyPI: https://pypi.org/project/sqlalchemy - Changelog: https://pyup.io/changelogs/sqlalchemy/ - Homepage: http://www.sqlalchemy.orgUpdate tqdm from 4.32.2 to 4.35.0.
Changelog
### 4.34.0 ``` - add `leave=None` convenience option for `leave = position == 0` - ensure nested completed bars respect `leave=True` (230) - ensure nested bars are cleared before being moved up (795) - support both ` ` and `=` syntax for CLI options (761 -> 774) - misc documentation updates (778, 782) - fix/update tests - update GitHub docker package deployment ``` ### 4.33.0 ``` - fix `pandas==0.25` API change (780) - add contributor badges (`sourcerer`) - fix py26 travis CI - metadata fixes + `.zenodo.json` + `CODEOWNERS` - GitHub package registry docker deployment - minor linting - documentation updates (773) ```Links
- PyPI: https://pypi.org/project/tqdm - Changelog: https://pyup.io/changelogs/tqdm/ - Repo: https://github.com/tqdm/tqdmUpdate hypothesis from 4.32.2 to 4.34.0.
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- PyPI: https://pypi.org/project/hypothesis - Changelog: https://pyup.io/changelogs/hypothesis/ - Repo: https://github.com/HypothesisWorks/hypothesis/tree/master/hypothesis-pythonUpdate pytest from 5.0.1 to 5.1.2.
Changelog
### 5.1.2 ``` ========================= Bug Fixes --------- - `2270 <https://github.com/pytest-dev/pytest/issues/2270>`_: Fixed ``self`` reference in function-scoped fixtures defined plugin classes: previously ``self`` would be a reference to a *test* class, not the *plugin* class. - `570 <https://github.com/pytest-dev/pytest/issues/570>`_: Fixed long standing issue where fixture scope was not respected when indirect fixtures were used during parametrization. - `5782 <https://github.com/pytest-dev/pytest/issues/5782>`_: Fix decoding error when printing an error response from ``--pastebin``. - `5786 <https://github.com/pytest-dev/pytest/issues/5786>`_: Chained exceptions in test and collection reports are now correctly serialized, allowing plugins like ``pytest-xdist`` to display them properly. - `5792 <https://github.com/pytest-dev/pytest/issues/5792>`_: Windows: Fix error that occurs in certain circumstances when loading ``conftest.py`` from a working directory that has casing other than the one stored in the filesystem (e.g., ``c:\test`` instead of ``C:\test``). ``` ### 5.1.1 ``` ========================= Bug Fixes --------- - `5751 <https://github.com/pytest-dev/pytest/issues/5751>`_: Fixed ``TypeError`` when importing pytest on Python 3.5.0 and 3.5.1. ``` ### 5.1.0 ``` ========================= Removals -------- - `5180 <https://github.com/pytest-dev/pytest/issues/5180>`_: As per our policy, the following features have been deprecated in the 4.X series and are now removed: * ``Request.getfuncargvalue``: use ``Request.getfixturevalue`` instead. * ``pytest.raises`` and ``pytest.warns`` no longer support strings as the second argument. * ``message`` parameter of ``pytest.raises``. * ``pytest.raises``, ``pytest.warns`` and ``ParameterSet.param`` now use native keyword-only syntax. This might change the exception message from previous versions, but they still raise ``TypeError`` on unknown keyword arguments as before. * ``pytest.config`` global variable. * ``tmpdir_factory.ensuretemp`` method. * ``pytest_logwarning`` hook. * ``RemovedInPytest4Warning`` warning type. * ``request`` is now a reserved name for fixtures. For more information consult `Deprecations and Removals <https://docs.pytest.org/en/latest/deprecations.html>`__ in the docs. - `5565 <https://github.com/pytest-dev/pytest/issues/5565>`_: Removed unused support code for `unittest2 <https://pypi.org/project/unittest2/>`__. The ``unittest2`` backport module is no longer necessary since Python 3.3+, and the small amount of code in pytest to support it also doesn't seem to be used: after removed, all tests still pass unchanged. Although our policy is to introduce a deprecation period before removing any features or support for third party libraries, because this code is apparently not used at all (even if ``unittest2`` is used by a test suite executed by pytest), it was decided to remove it in this release. If you experience a regression because of this, please `file an issue <https://github.com/pytest-dev/pytest/issues/new>`__. - `5615 <https://github.com/pytest-dev/pytest/issues/5615>`_: ``pytest.fail``, ``pytest.xfail`` and ``pytest.skip`` no longer support bytes for the message argument. This was supported for Python 2 where it was tempting to use ``"message"`` instead of ``u"message"``. Python 3 code is unlikely to pass ``bytes`` to these functions. If you do, please decode it to an ``str`` beforehand. Features -------- - `5564 <https://github.com/pytest-dev/pytest/issues/5564>`_: New ``Config.invocation_args`` attribute containing the unchanged arguments passed to ``pytest.main()``. - `5576 <https://github.com/pytest-dev/pytest/issues/5576>`_: New `NUMBER <https://docs.pytest.org/en/latest/doctest.htmlusing-doctest-options>`__ option for doctests to ignore irrelevant differences in floating-point numbers. Inspired by Sébastien Boisgérault's `numtest <https://github.com/boisgera/numtest>`__ extension for doctest. Improvements ------------ - `5471 <https://github.com/pytest-dev/pytest/issues/5471>`_: JUnit XML now includes a timestamp and hostname in the testsuite tag. - `5707 <https://github.com/pytest-dev/pytest/issues/5707>`_: Time taken to run the test suite now includes a human-readable representation when it takes over 60 seconds, for example:: ===== 2 failed in 102.70s (0:01:42) ===== Bug Fixes --------- - `4344 <https://github.com/pytest-dev/pytest/issues/4344>`_: Fix RuntimeError/StopIteration when trying to collect package with "__init__.py" only. - `5115 <https://github.com/pytest-dev/pytest/issues/5115>`_: Warnings issued during ``pytest_configure`` are explicitly not treated as errors, even if configured as such, because it otherwise completely breaks pytest. - `5477 <https://github.com/pytest-dev/pytest/issues/5477>`_: The XML file produced by ``--junitxml`` now correctly contain a ``<testsuites>`` root element. - `5523 <https://github.com/pytest-dev/pytest/issues/5523>`_: Fixed using multiple short options together in the command-line (for example ``-vs``) in Python 3.8+. - `5524 <https://github.com/pytest-dev/pytest/issues/5524>`_: Fix issue where ``tmp_path`` and ``tmpdir`` would not remove directories containing files marked as read-only, which could lead to pytest crashing when executed a second time with the ``--basetemp`` option. - `5537 <https://github.com/pytest-dev/pytest/issues/5537>`_: Replace ``importlib_metadata`` backport with ``importlib.metadata`` from the standard library on Python 3.8+. - `5578 <https://github.com/pytest-dev/pytest/issues/5578>`_: Improve type checking for some exception-raising functions (``pytest.xfail``, ``pytest.skip``, etc) so they provide better error messages when users meant to use marks (for example ``pytest.xfail`` instead of ``pytest.mark.xfail``). - `5606 <https://github.com/pytest-dev/pytest/issues/5606>`_: Fixed internal error when test functions were patched with objects that cannot be compared for truth values against others, like ``numpy`` arrays. - `5634 <https://github.com/pytest-dev/pytest/issues/5634>`_: ``pytest.exit`` is now correctly handled in ``unittest`` cases. This makes ``unittest`` cases handle ``quit`` from pytest's pdb correctly. - `5650 <https://github.com/pytest-dev/pytest/issues/5650>`_: Improved output when parsing an ini configuration file fails. - `5701 <https://github.com/pytest-dev/pytest/issues/5701>`_: Fix collection of ``staticmethod`` objects defined with ``functools.partial``. - `5734 <https://github.com/pytest-dev/pytest/issues/5734>`_: Skip async generator test functions, and update the warning message to refer to ``async def`` functions. Improved Documentation ---------------------- - `5669 <https://github.com/pytest-dev/pytest/issues/5669>`_: Add docstring for ``Testdir.copy_example``. Trivial/Internal Changes ------------------------ - `5095 <https://github.com/pytest-dev/pytest/issues/5095>`_: XML files of the ``xunit2`` family are now validated against the schema by pytest's own test suite to avoid future regressions. - `5516 <https://github.com/pytest-dev/pytest/issues/5516>`_: Cache node splitting function which can improve collection performance in very large test suites. - `5603 <https://github.com/pytest-dev/pytest/issues/5603>`_: Simplified internal ``SafeRepr`` class and removed some dead code. - `5664 <https://github.com/pytest-dev/pytest/issues/5664>`_: When invoking pytest's own testsuite with ``PYTHONDONTWRITEBYTECODE=1``, the ``test_xfail_handling`` test no longer fails. - `5684 <https://github.com/pytest-dev/pytest/issues/5684>`_: Replace manual handling of ``OSError.errno`` in the codebase by new ``OSError`` subclasses (``PermissionError``, ``FileNotFoundError``, etc.). ```Links
- PyPI: https://pypi.org/project/pytest - Changelog: https://pyup.io/changelogs/pytest/ - Homepage: https://docs.pytest.org/en/latest/Update python-coveralls from 2.9.2 to 2.9.3.
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- PyPI: https://pypi.org/project/python-coveralls - Changelog: https://pyup.io/changelogs/python-coveralls/ - Repo: http://github.com/z4r/python-coveralls