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jason-weirather / hla-polysolver

Fork of the Polysolver project
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Call Stats file not produced #13

Closed ramit29 closed 4 years ago

ramit29 commented 4 years ago

Hi, I'm trying to run the test files given as part of the repo. The HLA alleles get typed right but after that when I run shell_call_hla_mutations_from_type it does not return the call_stats file as expected. Any help to workaround this issue would be appreciated.

ramit29 commented 4 years ago

I tested the docker version of the tool and it seems like the call_stats file gets deleted even though it's produced from MuTecT, commenting out some of the final few rm commands worked. I'll spend some more time later trying to figure what's the exact issue. But for now Polysolver is working as expected.