search

jasonkyuyim / se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation
https://arxiv.org/abs/2302.02277
MIT License
305 stars 50 forks source link

Issue with FileNotFoundError for sample_1.fa during inference #30

Closed RinGhalSun closed 1 year ago

RinGhalSun commented 1 year ago

Hi Jason,

I'm encountering an issue while running inference using the protein_mpnn package. The problem occurs when attempting to sample sequences of length 305. Specifically, I'm receiving the following error:

FileNotFoundError: [Errno 2] No such file or directory: './inference_outputs/23D_08M_2023Y_00h_09m_35s/length_305/sample_1/self_consistency/seqs/sample_1.fa'

It's worth noting that the file length_305/sample_0/self_consistency/seq/sample_1.fa was successfully generated. However, the corresponding sample_1.fa file for the first sample of length_305/sample_1/self_consistency/seq/sample_1.fa fails to be generated by the protein_mpnn package.

Kind regards,

Zheng

jasonkyuyim commented 1 year ago

Hi, I see this issue happen from time to time. I found that re-running the script again solves the issue. Since restarting works, I was too lazy to look into what was going on haha...

RinGhalSun commented 1 year ago

lol, thanks a lot mate!