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jasonxanthakis / NeuroML-Thesis

Repository to research and practice software for Uni Year 3 Thesis
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Last two weeks of project #12

Closed jasonxanthakis closed 5 months ago

jasonxanthakis commented 6 months ago

I made this issue for the sake of keeping all progress and communication in one place.

jasonxanthakis commented 6 months ago

@pgleeson @sanjayankur31 I have almost finished adapting the del molino fI curves to the yao ones. I only to make some minor adjustments, except for the pyramidal cell curve, which is proving tricky. image image

This is the adjusted LEMS code. If I've messed something up please let me know. image

I am very confused about the connectivity though. When multiplying pcon with Gsyn, the values I get are tiny: image

Also, since there is a much larger population of pyramidal cells compared to interneurons, would this also play a role on the strength of the connections?

jasonxanthakis commented 6 months ago

@pgleeson This is the finalised fI curve for the rate based model. It's as close as I could get it. image image

This is the LEMS for the adjusted del molino. Again, please let me know if I messed something up or if one of the parameters looks completely wrong: image

jasonxanthakis commented 5 months ago

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jasonxanthakis commented 5 months ago

image image

pgleeson commented 5 months ago

Looks good! Have a read over the relevant section of the Yao paper againa nd see if there are any other quick tests/demonstrations of functionality you can see mentioned there as other ways to illustrate that your network is behaving close to theirs.