Hi this isn't an issue per se, but I was wondering if you have any advice on how to run prophet against many genomes in iteration?
Say I have a directory with genome1.fna, genome1.gff, genome2.fna, genome2.gff etc., how could I run ProphET against all pairs of files? Is there an inbuilt way to do this with an index file or do I need to make a for loop to run through all pairs?
Hi this isn't an issue per se, but I was wondering if you have any advice on how to run prophet against many genomes in iteration?
Say I have a directory with genome1.fna, genome1.gff, genome2.fna, genome2.gff etc., how could I run ProphET against all pairs of files? Is there an inbuilt way to do this with an index file or do I need to make a for loop to run through all pairs?
Thanks in advance!
(sorry for what is likely a very nooby question)