Rewrite "composite approaches" section

[jaclyn-taroni]

Purpose

Addresses #128. This attempts to tie how the challenges presented throughout the manuscript are addressed by the approaches highlighted in this section (DeepProfile and MultiPLIER).

Directions for reviewers

I'll note that, ideally, before this goes in someone takes another pass (or we plan another pass prior to submission), as I didn't closely read this after writing it and spending time away like I like to. But to address the first bulletpoint below, someone besides me needs to look!

• This may not be exactly what @jaybee84 intended with #128, but does it address the spirit of the issue?
• I certainly didn't make the section shorter. What can I cut?
• I don't think the versioned DOI for DeepProfile is going to work - we might need to use the URL (versioning does work for that according to the FAQ). Has anyone tried to tie something to a specific bioRxiv version elsewhere in the manuscript?
• VAEs are included in the definition section and specifically text that used to live in this section. How do we link to that definition?

Is the pull request ready for review?

Yes.

Manuscript checklist

Unless otherwise noted above, this PR will be considered ready for review when all four items have been checked.

• [x] All changes to text follow "one sentence per line" [Manubot instructions]
• [x] All citations follow the Manubot citation instructions
• [x] All changes or additions to tables follow the Manubot table instructions
• [x] All figures follow the Manubot figure instructions
• [ ] All terms that need to be added to glossary have been added to #50
• [ ] There are no new spelling errors identified by the Manubot spellchecker

[AppVeyorBot]

AppVeyor build 1.0.311 for commit 76f2fed25dde94820b6aadf7071133d02808b908 is now complete.

Found 6 potential spelling error(s). Preview:

content/05.prior-knowledge.md:25:TODO content/06.multiple-approaches-required.md:13:TODO content/06.multiple-approaches-required.md:14:VAE's content/06.multiple-approaches-required.md:16:TODO content/06.multiple-approaches-required.md:17:histopathology content/07.definitions.md:4:TODO...

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• manuscript-1.0.311-76f2fed.html
  • manuscript-1.0.311-76f2fed.pdf
  • spelling-errors-1.0.311-76f2fed.txt
  • spelling-error-locations-1.0.311-76f2fed.txt

[jaclyn-taroni]

I will file an issue for linking between sections and then use the URL to tie to a specific version of DeepProfile.

[AppVeyorBot]

AppVeyor build 1.0.312 for commit 6153c3ece25d05b6df51d43b721cc28fe45ebbd7 is now complete.

Found 6 potential spelling error(s). Preview:

content/05.prior-knowledge.md:25:TODO content/06.multiple-approaches-required.md:13:TODO content/06.multiple-approaches-required.md:14:VAE's content/06.multiple-approaches-required.md:16:TODO content/06.multiple-approaches-required.md:17:histopathology content/07.definitions.md:4:TODO...

The rendered manuscript from this build is temporarily available for download at:

• manuscript-1.0.312-6153c3e.html
  • manuscript-1.0.312-6153c3e.pdf
  • spelling-errors-1.0.312-6153c3e.txt
  • spelling-error-locations-1.0.312-6153c3e.txt

[jaclyn-taroni]

@jaybee84 I know you approved, but I'd like you to take another look before this goes in! I tried to address your comments without changing sentences to be in passive voice where possible.

[AppVeyorBot]

AppVeyor build 1.0.313 for commit 4f7949c2cdb7b6b35286b6ef54212f96f6e84858 is now complete.

Found 6 potential spelling error(s). Preview:

content/05.prior-knowledge.md:25:TODO content/06.multiple-approaches-required.md:12:TODO content/06.multiple-approaches-required.md:13:VAE's content/06.multiple-approaches-required.md:15:TODO content/06.multiple-approaches-required.md:16:histopathology content/07.definitions.md:4:TODO...

The rendered manuscript from this build is temporarily available for download at:

• manuscript-1.0.313-4f7949c.html
  • manuscript-1.0.313-4f7949c.pdf
  • spelling-errors-1.0.313-4f7949c.txt
  • spelling-error-locations-1.0.313-4f7949c.txt

[AppVeyorBot]

AppVeyor build 1.0.314 for commit 788c48564d95e7d64dc1c72ce1e3440b6f184230 is now complete.

Found 6 potential spelling error(s). Preview:

content/05.prior-knowledge.md:25:TODO content/06.multiple-approaches-required.md:12:TODO content/06.multiple-approaches-required.md:13:VAE's content/06.multiple-approaches-required.md:15:TODO content/06.multiple-approaches-required.md:16:histopathology content/07.definitions.md:4:TODO...

The rendered manuscript from this build is temporarily available for download at:

• manuscript-1.0.314-788c485.html
  • manuscript-1.0.314-788c485.pdf
  • spelling-errors-1.0.314-788c485.txt
  • spelling-error-locations-1.0.314-788c485.txt