jaybee84 / ml-in-rd

Manuscript for perspective on machine learning in rare disease
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Add more knowledge graph context #189

Closed allaway closed 2 years ago

allaway commented 2 years ago

Purpose

Address #176

Directions for reviewers

Let me know if this reads alright!

Which areas should receive a particularly close look?

My statements about the future of KGs in rare disease.

Is there anything that you want to discuss further?

I want to ensure that I addressed @jaclyn-taroni's comment in #176, I think I provided enough examples of how non-rare-disease data can be leveraged but watn to check.

Is the pull request ready for review?

Manuscript checklist

Unless otherwise noted above, this PR will be considered ready for review when all four items have been checked.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.451 for commit 03aa58591d5b5db0107ac2b7a253304b0108a55c is now complete.

Found 3 potential spelling error(s). Preview:content/05.prior-knowledge.md:11:embeddings content/05.prior-knowledge.md:11:embeddings content/05.prior-knowledge.md:12:embeddings...
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AppVeyor build 1.0.487 for commit b4582947c75d2a01c324c99d57cf54668aa7f153 is now complete.

Found 15 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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AppVeyor build 1.0.488 for commit 82fb28aff2942c1f79e92acd1f60b1c0c1801ef0 is now complete.

Found 15 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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jaybee84 commented 2 years ago

@allaway are you ok if we merge in this PR? there may be one question that needs your response in the discussion above :)

allaway commented 2 years ago

Sorry for my delay. This is good to merge @jaybee84

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.490 for commit 1524ec86ed3dcaa421322799fc30a5780fa053fe is now complete.

Found 15 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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AppVeyor build 1.0.491 for commit 1524ec86ed3dcaa421322799fc30a5780fa053fe is now complete.

Found 13 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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AppVeyor build 1.0.492 for commit 88376a1f818c8acb4f85f3a764cd4101ec2eff61 is now complete.

Found 13 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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AppVeyor build 1.0.493

Found 13 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know for commit 7091b28dad13f05f203451967711121cb21bbe4d is now complete....
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.494 for commit 34a3889adc0dce2f57ea29ff224244d3ce76d063 is now complete.

Found 13 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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AppVeyor build 1.0.495 for commit 5608d0c772064f698b7f584da2e7cae3eee7ad72 is now complete.

Found 13 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:8:dataframe content/04. box_1_experimental_design.md:28:subsampling content/07.prior-know...
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