jaybee84 / ml-in-rd

Manuscript for perspective on machine learning in rare disease
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remove jargon and address reviewer critiques #198

Closed jaybee84 closed 2 years ago

jaybee84 commented 2 years ago

Purpose

closes #175 For review please refer to the comments linked in #199

Directions for reviewers

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the pull request ready for review?

Yes

Manuscript checklist

Unless otherwise noted above, this PR will be considered ready for review when all four items have been checked.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.504 for commit 99fc8eb14a11fa25847c83bd6254c360f05d2186 is now complete.

Found 16 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:9:responder content/02.intro.md:9:responder content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:8:collinearity content/03.combining-datasets.md:9:TODO content/04. box_1_experimental_design.md:28:subsampling content/06.model-complexity.md:4:TODO content/06.model-complexity.md:13:ac...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.513 for commit 61b27fab13aa03834258c64874b761a5b900a94d is now complete.

Found 9 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:4:TODO content/06.model-complexity.md:19:everytime content/06.model-complexity.md:33:accomodate content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.514 for commit c8c9b46b48ea1860e63b0daf0cd4a88808c031f1 is now complete.

Found 8 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:17:everytime content/06.model-complexity.md:31:accomodate content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.515 for commit 3592321a234c1d28cb732433fbb1ffa9b39b94a3 is now complete.

Found 8 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:17:everytime content/06.model-complexity.md:29:accomodate content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.518 for commit af1867bead2de8f91763988ff37bef31b46a116a is now complete.

Found 7 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:accomodate content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.519 for commit af1867bead2de8f91763988ff37bef31b46a116a is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.520 for commit 65e5b5b899a3df43aace9263cdd85381edbfd7e7 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/07.prior-knowledge.md:19:HPO content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.526 for commit 526d2e86e42cab1bf3057685c21fc0e1f2ec5265 failed.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.527 for commit 250e422b6b866239096bf97cf50d5037d05aa250 failed.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.528 for commit 35986118270f3449c0c951a9aa626e99cb0b457d failed.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.529 for commit c9ab2b94eee9d17acbbf68f9dc91082637c3e82d failed.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.530 for commit aa89ff9d898b989c0c47be33faf12a8beea17b93 failed.

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.531 for commit 0530b411750984f983ff29fc7ebd0aa55055688f failed.

jaybee84 commented 2 years ago

troubleshooting the build fails here: https://github.com/manubot/manubot/issues/329

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.532 for commit bd00066e88abbe2503c6cb68d14fb3cdc3c797a6 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:27:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.533 for commit 0186f306a235441ebe738b87b0edb40382f99d3e is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:recalibrated content/07.prior-knowledge.md:19:TODO...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.534 for commit 1a07fe2e6e3de39a29a5213c05e2c4b33bf371ff is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.535 for commit 9a345cda3bef64b434ddb6153070648f300d6097 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.536 for commit 0eed1fc18058ae8186977e2011cad847657fcd90 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.537 for commit af9b2daa752381ed864c37050e9b975f03d0b6fe is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:29:recalibrated content/07.prior-knowledge.md:19:TODO...
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jaybee84 commented 2 years ago

ok... I think this PR is now ready for review

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.538

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
for commit 2930e7928f9b93b614df4fe105e82d9deb95ec7c is now complete. The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 2 years ago

AppVeyor build 1.0.539 for commit 73d69b7a989c2741b5be30de9e2f91a23b5f17ef is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.540 for commit 2906dacc62defe94ef53ba9c72325248c52362c8 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.541 for commit e176d478c8e47ef0f9952c63589b9ec5a23704ff is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.542 for commit ef7dc624da161eebc9206d63a65b89a3a26a0a70 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.543 for commit 41879c04bf8d228f2493a793b7f8c405226da3db is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/07.prior-knowledge.md:19:TODO...
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AppVeyorBot commented 2 years ago

AppVeyor build 1.0.544 for commit 98cd4e21f790b8d2f4d5e7fd869826d7b12d04c8 is now complete.

Found 9 potential spelling error(s). Preview:content/02.intro.md:6:TODO content/02.intro.md:16:TODO content/03.combining-datasets.md:5:TODO content/03.combining-datasets.md:9:TODO content/06.model-complexity.md:28:recalibrated content/06.model-complexity.md:37:Kullback content/06.model-complexity.md:37:Leibler content/06.model-complexity.md:37:luekemia content/07.prior-knowledge.md:19:TODO...
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