search

jaybee84 / ml-in-rd

Manuscript for perspective on machine learning in rare disease
Other
2 stars 1 forks source link

adding cascade learning blurb #56

Closed jaybee84 closed 4 years ago

jaybee84 commented 4 years ago

Purpose

adds cascade learning blurb, closes #6

Directions for reviewers

Which areas should receive a particularly close look?

content

Is there anything that you want to discuss further?

anything particular to add?

Is the pull request ready for review?

no

Manuscript checklist

Unless otherwise noted above, this PR will be considered ready for review when all four items have been checked.

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.17 for commit f526b423e9d0e2ecd3a8ba3bc9e198575f2bdeed is now complete.

Found 66 potential spelling error(s). Preview:content/01.abstract.md:3:biomedicine content/01.abstract.md:4:phenotypes content/01.abstract.md:5:datasets content/03.prior-knowledge.cascadelearning.md:3:abd content/03.prior-knowledge.cascadelearning.md:3:learnings content/03.prior-knowledge.cascadelearning.md:7:eg content/03.prior-knowledge.cascadelearning.md:8:dataset content/03.prior-knowledge.cascadelearning.md:8:labelled content/03.prior-knowledge.cascadelearning.m...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.18 for commit b494c87db0adfb8dd078bc349d3d6f5652eed33f is now complete.

Found 62 potential spelling error(s). Preview:content/01.abstract.md:3:biomedicine content/01.abstract.md:4:phenotypes content/01.abstract.md:5:datasets content/03.prior-knowledge.cascadelearning.md:3:learnings content/03.prior-knowledge.cascadelearning.md:8:dataset content/03.prior-knowledge.cascadelearning.md:8:uncertainity content/03.prior-knowledge.cascadelearning.md:9:dataset content/03.prior-knowledge.cascadelearning.md:9:uncertainity content/03.prior-knowledge...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.19 for commit 8304b2aa1764d49e63d4f6a894c2f100c6c4b821 is now complete.

Found 61 potential spelling error(s). Preview:content/01.abstract.md:3:biomedicine content/01.abstract.md:4:phenotypes content/01.abstract.md:5:datasets content/03.prior-knowledge.cascadelearning.md:8:dataset content/03.prior-knowledge.cascadelearning.md:8:uncertainity content/03.prior-knowledge.cascadelearning.md:9:dataset content/03.prior-knowledge.cascadelearning.md:9:uncertainity content/03.prior-knowledge.cascadelearning.md:11:arXiv content/03.prior-knowledge.ca...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.20 for commit 446bdeb87aafb706e41523e0a7950e93d84fd236 is now complete.

Found 59 potential spelling error(s). Preview:content/01.abstract.md:3:biomedicine content/01.abstract.md:4:phenotypes content/01.abstract.md:5:datasets content/03.prior-knowledge.cascadelearning.md:8:dataset content/03.prior-knowledge.cascadelearning.md:9:dataset content/03.prior-knowledge.cascadelearning.md:11:arXiv content/03.prior-knowledge.cascadelearning.md:12:dataset content/03.prior-knowledge.md:3:datasets content/04.model-complexity.md:2:phenotypes content/0...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.42 for commit 8b50b8989823a8bbd5f2b80ce70fae5b6ae7655c is now complete.

Found 5 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:3:learnings content/03.prior-knowledge.cascadelearning.md:6:eg content/03.prior-knowledge.cascadelearning.md:13:labelled content/04.model-complexity.regularization.md:11:dependance content/04.model-complexity.regularization.md:52:eg...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.43

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.44 for commit 5f5017cad17abca6c0a677c10337f9adc1feea63 is now complete.

Found 2 potential spelling error(s). Preview:content/04.model-complexity.regularization.md:11:dependance content/04.model-complexity.regularization.md:52:eg...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.45 for commit 7b1f6be910c4f62283cf736862a201bc7e0f15d4 is now complete.

Found 5 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:3:learnings content/03.prior-knowledge.cascadelearning.md:6:eg content/03.prior-knowledge.cascadelearning.md:13:labelled content/04.model-complexity.regularization.md:13:crossvalidation content/04.model-complexity.regularization.md:53:eg...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.46 for commit 83bf1d2c4e8c74c49d528a8c36e12c5f7772b343 is now complete.

Found 0 potential spelling error(s). Preview:...
The rendered manuscript from this build is temporarily available for download at:

jaybee84 commented 4 years ago

Purpose

adds cascade learning blurb, closes #6

Directions for reviewers

Which areas should receive a particularly close look?

content

Is there anything that you want to discuss further?

anything else we should add?

Is the pull request ready for review?

yes

Manuscript checklist

Unless otherwise noted above, this PR will be considered ready for review when all four items have been checked.

jaybee84 commented 4 years ago

Yeah, definitely agree with you on adding more details on ensembling methods, thought it would make sense to add in the hyperensemble blurb (#11). Of course they would finally be put all together in the methodological section.

Wrt advocating for cascade learning as a viable option for rare disease, I haven't quite formed that opinion yet.. need to read a bit more and contrast with other ensembling work out there. :)

Would love to hear if any authors have a strong opinion regarding it though :)

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.47

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.48 for commit 2be05f4b8a51f67fcd16a6fc8fc8065456ad08f1 is now complete.

Found 0 potential spelling error(s). Preview:...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.49 for commit 5a49d5a370be146003d6692ec84d00e906d90a84 is now complete.

Found 0 potential spelling error(s). Preview:...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.50 for commit ed61bb482ed799a13477b70b45a4c13659c86396 is now complete.

Found 0 potential spelling error(s). Preview:...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.54 for commit fa5a02441672654a097ce2dfaa1e7f11e8d93cc1 is now complete.

Found 4 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:14:Adaboost content/03.prior-knowledge.cascadelearning.md:22:eg content/03.prior-knowledge.cascadelearning.md:23:triaging content/03.prior-knowledge.cascadelearning.md:26:multiclass...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.55 for commit 1f61586ead340ff782d5d143f445ffffa6f0cb52 is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:14:Adaboost content/03.prior-knowledge.cascadelearning.md:23:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.56 for commit 2d164cfa0eff6ce261922b887262fd0b9506275a failed.

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.57 ...

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:14:Adaboost content/03.prior-knowledge.cascadelearning.md:23:triaging for commit 72c1de7a3250ab4367df76c3b977dc8346ee2607 is now complete. The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.58 for commit 5dd08368637ecd88ed3ea2e124feba11bdb2087f is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:14:AdaBoost content/03.prior-knowledge.cascadelearning.md:23:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.62 for commit 06b970502046bdfefc63eed419f9868d1cda18fa is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:14:AdaBoost content/03.prior-knowledge.cascadelearning.md:23:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.63 for commit afafc6bc0c3a7fed334748e8b69ea81921e722b2 is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:15:AdaBoost content/03.prior-knowledge.cascadelearning.md:24:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.64 for commit a4dc841e50df8351c85d363b4d158cfa144b3f76 is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:15:AdaBoost content/03.prior-knowledge.cascadelearning.md:24:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.70 for commit a32610f98c96663d5b059ab080c00bc2ef4cbf57 is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:15:AdaBoost content/03.prior-knowledge.cascadelearning.md:24:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.80 for commit 3c4fa61e4d67674eee77ce2db63a2be87169418f is now complete.

Found 2 potential spelling error(s). Preview:content/03.prior-knowledge.cascadelearning.md:10:AdaBoost content/03.prior-knowledge.cascadelearning.md:19:triaging...
The rendered manuscript from this build is temporarily available for download at:

AppVeyorBot commented 4 years ago

AppVeyor build 1.0.89 for commit 322ee8959a3d900bdce81cc67b7815eb9aca48e4 is now complete.

Found 6 potential spelling error(s). Preview:content/02.intro.md:3:interpretable content/02.intro.md:9:accomodate content/03.prior-knowledge.cascadelearning.md:10:AdaBoost content/03.prior-knowledge.cascadelearning.md:19:triaging content/04.model-complexity.bootstrapping.md:3:resampling content/04.model-complexity.bootstrapping.md:5:resampling...
The rendered manuscript from this build is temporarily available for download at: