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jazdrv / dnaTools

GNU General Public License v3.0
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integration of refpos rules into sort.py #30

Closed jazdrv closed 6 years ago

jazdrv commented 6 years ago

this requires some collaboration with Jef on what his arch intentions are

jeftreece commented 6 years ago

I'm not sure what you mean here; refpos handling should be done in get_variant_array(). If this is not working, I'd consider it a bug. I recently created a document, docs/genotype.txt that discusses how to interpret genotype from db interface. I'll add an explicit statement there.

jeftreece commented 6 years ago

I added a statement to genotype.txt that says what happens and pushed it to sqldev branch, so it's part of my latest pull request. I'll assign this issue back to you for further comment.

jeftreece commented 6 years ago

This is resolved with merge #38 to master