search

jbisanz / qiime2R

Import qiime2 artifacts to R
MIT License
156 stars 53 forks source link

Feature request: support for importing q2-longitudinal artifacts #43

Open yanxianl opened 2 years ago

yanxianl commented 2 years ago

Hi,

Thanks for developing and maintaining the qiim2R package that makes life a lot easier when exporting qiime2 artifacts to R. I tried to import first-differences/distances artifacts from the q2-longitudinal plugin, but I couldn't find the data after importing qiime2 artifacts with qiime2R. I guess this is not supported yet?

jbisanz commented 2 years ago

Perhaps it is an artifact format that isn't supported yet. What are you specifically trying to import?

yanxianl commented 2 years ago

first-differences.qza (output from qiime longitudinal first-differences) first-distances.qza (output from qiime longitudinal first-distances). Link to artifacts from qiime2 tutorial: https://docs.qiime2.org/2022.2/tutorials/longitudinal/#first-differencing-to-track-rate-of-change

jbisanz commented 2 years ago

That should be a straight forward addition, i'll add them in the next couple days.