Thanks so much for making this package. For my workflow, I am analyzing abundance data in R and then exporting it to Qiime 2 for other analyses (e.g., Songbird). This currently requires me to first export as a biom table in R and then, using a separate conda environment, convert that biom table to a qza object using Qiime 2. It would be much faster, though, to simply go from a table in R to exporting a qza file. Is this possible to do with qiime2R? (I looked in the documentation but couldn't find this; moreover, the closest function write_q2manifest() is not applicable)
Hello,
Thanks so much for making this package. For my workflow, I am analyzing abundance data in R and then exporting it to Qiime 2 for other analyses (e.g., Songbird). This currently requires me to first export as a biom table in R and then, using a separate conda environment, convert that biom table to a qza object using Qiime 2. It would be much faster, though, to simply go from a table in R to exporting a qza file. Is this possible to do with qiime2R? (I looked in the documentation but couldn't find this; moreover, the closest function
write_q2manifest()is not applicable)Thanks!