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jbisanz / qiime2R

Import qiime2 artifacts to R
MIT License
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Error when i call phyloseq object imported by qza_to_phyloseq #65

Closed pickyseok closed 6 months ago

pickyseok commented 7 months ago

Hello,

When i assign the phyloseq object using qzt_to_phyloseq() function, it doesn't show an error. However, when i call object to look through the data, unexpectedly it returns error.

This is the error message: 

ps <- 
  qiime2R::qza_to_phyloseq(
    features = "data/table-no-env.qza",
    tree = "data/insertion-tree.qza",
    taxonomy = "data/taxonomy.qza",
    metadata = "data/metadata_noenv.tsv")

phyloseq-class experiment-level object
Error in eval(call("force", as.symbol(paste0("..", x)))) : 
  argument "..2" is missing, with no default

I tried to reproduce the error with reprex, but it didn't work in this case. My guess is that it could be related to an issue creating the phyloseq object, but I don't know what exactly is causing this error.

Can you guess what might cause this issue ?