jbisanz / qiime2R

Import qiime2 artifacts to R
MIT License
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update parse_taxonomy for new PR2v5 (April 2023) nine level taxonomy #66

Closed MDHDZ91 closed 5 months ago

MDHDZ91 commented 5 months ago

Can you update parse_taxonomy to include the new taxonomic levels for PR2 c("Domain","Supergroup","Division","Subdivision", "Class","Order","Family","Genus","Species")? That's nine levels instead of the default 7 that currently exist.

I have modified your code and can do a pull request with my suggestions. Alternatively we could create a new function pr2_parse_taxonomy that does the same thing? Let me know what you think is best and I can work on a pull request.