Closed jbloom closed 4 years ago
the count_variants.ipynb
gives some garbled output in the cell currently at input [34] -- not sure I understand where it's coming from but wanted to point it out
didn't delete branch in case you were staying on this branch for more changes. Feel free to delete or let me know and I'll delete
Good call, I will fix the garbled output in next pull request.
@tylernstarr: The
count_variants.ipynb
now runs through and outputs the CSV as well as plots.I haven't yet run
Snakefile
to make Markdown output or fixed the barcode parsing, but maybe good to merge this too so it's onmaster
if you are running it, and I'll make new pull requests for those later steps shortly.