count variants with multiple targets

jbloomlab / SARS-CoV-2-RBD_DMS

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

BSD 3-Clause "New" or "Revised" License

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count variants with multiple targets #17

Closed jbloom closed 4 years ago

jbloom commented 4 years ago

@tylernstarr: The count_variants.ipynb now runs through and outputs the CSV as well as plots.

I haven't yet run Snakefile to make Markdown output or fixed the barcode parsing, but maybe good to merge this too so it's on master if you are running it, and I'll make new pull requests for those later steps shortly.

tylernstarr commented 4 years ago

the count_variants.ipynb gives some garbled output in the cell currently at input [34] -- not sure I understand where it's coming from but wanted to point it out

tylernstarr commented 4 years ago

didn't delete branch in case you were staying on this branch for more changes. Feel free to delete or let me know and I'll delete

jbloom commented 4 years ago

Good call, I will fix the garbled output in next pull request.