parse barcodes more effectively, get `Snakefile` working

jbloomlab / SARS-CoV-2-RBD_DMS

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

BSD 3-Clause "New" or "Revised" License

43 stars 17 forks source link

Closed jbloom closed 4 years ago

jbloom commented 4 years ago

The required barcode flanking region is reduced, so the efficiency of barcode parsing is now much better (many more valid).

Also, Snakefile now runs successfully to create variant counts and Markdown summary.

jbloom commented 4 years ago

@tylernstarr: This should fix prior problems, can you review and merge?