Closed jbloom closed 4 years ago
@tylernstarr, sorry, this should be the last trivial organizational one---then I'll start on the actual problem of handling multiple alignment targets. Can you just check and review this one?
If you've activated the conda environment, I think you then just reference it with mkdssp
without a full path as it should be in the executable path. Does this not work? Assuming it works, this is better because then the analysis can also be run in some other directory as it doesn't have a hard-coded path name.
True, I guess I don’t know if R references the executable path or if it requires a full path. I’ll approve the change for now and test it out
I think it references executable path. Look at example from the bio3d
package: their default is just an executable path of dssp
:
http://thegrantlab.org/bio3d/html/dssp.html
This is better than including the executable in the repo. It is now just installed with other programs and can be accessed with the command
mkdssp
(note notdssp
).