Closed skhilton closed 4 years ago
@jbloom: I haven't looked at the snakemake pipeline so I will have to work with @tylernstarr on that.
Your point about the up-to-date data makes sense. Let's go with that. I will work on getting a basic index.html up and working. Let's hold off on this PR until those two steps (snakemake integration and docs/index.html
are done
@tylernstarr @skhilton, I can also put in Snakemake
pipeline if that is easier. Just let me know? @tylernstarr has been doing this a lot for *.Rmd
, but I can do for Juypyter if easier.
I think once that is done this could potentially be merged and the GitHub pages could be a separate pull request?
@jbloom yes I was just about to look at this and was overwhelmed a bit by my ineptitude. I could figure out the Snakemake but you can probalby do much more quickly. Especially with this impending 5pm shutoff! I probably wouldn't make it... 😬
(I did look at the html though and definitely approve that part of the PR! Looking so good!)
This PR updates the
interactive_heatmap.ipynb
and the resultingresults/interactive_heatmap.html
.In the new interactive heatmap:
Next steps include
Final note: I know that other bloom lab repos have github pages served from a
gh-pages
branch. Github now suggests that you serve from your master branch but in a docs folder. However, in this case, maybe agh-pages
branch makes sense? I could tweak things for the website without pushing to master directly.