Interactive heatmap

[skhilton]

This PR updates the interactive_heatmap.ipynb and the resulting results/interactive_heatmap.html.

In the new interactive heatmap:

• the expression and binding data are shown as heatmaps
• tooltips are linked between the two heatmaps and reveal extra information
• the subset dropdown filters the data to pre-defined sets of sites
• the zoom bar restricts the x-scale (site) domain for the heatmaps
• additional RSA heatmap provides some structural information

Next steps include

• setting up github pages. I need to be an admin (or at least have access to the settings on this directory) to do that myself
• cleaning up the code. there are definitely ways to make this more flexible in the future (remove some hard coded values) but I wasn't sure how important this is. The code works and I think it is pretty legible.
• final tweaks to layout and instructions/notes which I think will be best done in the context of the website itself.

Final note: I know that other bloom lab repos have github pages served from a gh-pages branch. Github now suggests that you serve from your master branch but in a docs folder. However, in this case, maybe a gh-pages branch makes sense? I could tweak things for the website without pushing to master directly.

[skhilton]

@jbloom: I haven't looked at the snakemake pipeline so I will have to work with @tylernstarr on that.

Your point about the up-to-date data makes sense. Let's go with that. I will work on getting a basic index.html up and working. Let's hold off on this PR until those two steps (snakemake integration and docs/index.html are done

[jbloom]

@tylernstarr @skhilton, I can also put in Snakemake pipeline if that is easier. Just let me know? @tylernstarr has been doing this a lot for *.Rmd, but I can do for Juypyter if easier.

I think once that is done this could potentially be merged and the GitHub pages could be a separate pull request?

[tylernstarr]

@jbloom yes I was just about to look at this and was overwhelmed a bit by my ineptitude. I could figure out the Snakemake but you can probalby do much more quickly. Especially with this impending 5pm shutoff! I probably wouldn't make it... 😬

[tylernstarr]

(I did look at the html though and definitely approve that part of the PR! Looking so good!)