jbloomlab / SARS2-mut-fitness

Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
MIT License
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Feat/synmuts additions #29

Closed rneher closed 1 year ago

rneher commented 1 year ago

This is the branch with the last iteration on the synonymous mutations.

it is run as

python3 scripts/noncoding_constraints.py --fitness results/nt_fitness/ntmut_fitness_all.csv --output test.png

and produces a figure like this:

test